Wall clock time and date at job start Sun Mar 29 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37845 * 119.56452 * 2 1 4 4 C 1.39525 * 119.12980 * 180.02562 * 3 2 1 5 5 N 1.39180 * 120.85454 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00197 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46840 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.39367 * 118.29853 * 0.25801 * 4 3 2 18 18 C 1.38209 * 119.04537 * 359.52180 * 17 4 3 19 19 F 1.35109 * 119.60756 * 180.20945 * 18 17 4 20 20 N 1.32033 * 119.56172 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47139 * 89.99388 * 1 2 3 22 22 H 1.08997 * 109.47118 * 209.99876 * 1 2 3 23 23 H 1.08999 * 109.46893 * 329.99210 * 1 2 3 24 24 H 1.08006 * 120.43721 * 0.03060 * 3 2 1 25 25 H 0.97005 * 119.99355 * 0.02562 * 5 4 3 26 26 H 1.09001 * 109.46813 * 60.00254 * 6 5 4 27 27 H 1.08992 * 109.47397 * 300.00316 * 6 5 4 28 28 H 1.09002 * 109.47398 * 300.00326 * 7 6 5 29 29 H 1.09001 * 109.47194 * 60.00507 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 32 32 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 33 33 H 1.08001 * 120.47916 * 179.72252 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1990 0.0000 4 6 3.5823 1.1884 -0.0005 5 7 4.3052 2.3778 -0.0011 6 6 5.7698 2.3448 -0.0022 7 6 6.3120 3.7756 -0.0033 8 6 7.8416 3.7412 -0.0051 9 6 8.3757 5.1504 -0.0055 10 1 7.6925 5.9868 -0.0042 11 6 9.7366 5.3719 -0.0066 12 7 10.2027 6.6016 -0.0064 13 14 10.9183 3.9251 -0.0068 14 1 11.2304 3.5411 -1.4069 15 1 12.1710 4.3091 0.6921 16 1 10.2929 2.7750 0.6942 17 6 4.2337 -0.0437 -0.0066 18 6 3.4792 -1.2016 -0.0017 19 9 4.0989 -2.4022 -0.0032 20 7 2.1584 -1.1485 -0.0005 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.6471 2.1343 0.0005 25 1 3.8391 3.2285 -0.0007 26 1 6.1208 1.8230 -0.8925 27 1 6.1222 1.8230 0.8874 28 1 5.9596 4.2971 -0.8932 29 1 5.9611 4.2978 0.8868 30 1 8.1944 3.2196 0.8846 31 1 8.1923 3.2192 -0.8953 32 1 11.1601 6.7574 -0.0075 33 1 5.3126 -0.0930 -0.0117 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429083.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:00 Heat of formation + Delta-G solvation = -46.611658 kcal Electronic energy + Delta-G solvation = -15808.933064 eV Core-core repulsion = 12975.541746 eV Total energy + Delta-G solvation = -2833.391318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.02578 -41.18574 -38.07135 -35.71779 -33.93630 -33.27556 -31.47114 -28.99955 -28.04636 -24.74699 -24.27858 -22.38804 -22.03637 -19.04059 -18.87842 -18.16055 -17.12443 -17.11323 -16.45801 -16.38738 -16.33805 -15.55102 -14.92832 -14.78739 -14.50044 -14.39792 -14.19352 -13.74595 -13.15437 -13.09122 -12.92445 -12.73518 -12.61224 -11.99346 -11.78883 -11.72457 -11.41566 -11.33660 -10.77220 -10.66748 -9.86742 -8.93037 -8.30301 -6.34881 -0.00201 0.40271 1.37124 1.38871 1.50017 2.19146 2.35708 2.66083 2.66460 3.05746 3.53772 3.96531 4.01913 4.07157 4.18141 4.25464 4.48719 4.55670 4.74102 4.82502 4.85536 4.87128 4.92073 5.01031 5.03670 5.23179 5.43943 5.54740 5.61455 5.66342 6.05672 6.26488 6.62630 6.74022 6.83624 7.30230 8.86350 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040456 B = 0.004208 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.949268 B = 6652.738449 C = 7313.637110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.187 3.813 3 C -0.256 4.256 4 C 0.277 3.723 5 N -0.717 5.717 6 C 0.124 3.876 7 C -0.102 4.102 8 C -0.011 4.011 9 C -0.533 4.533 10 H 0.033 0.967 11 C 0.002 3.998 12 N -0.952 5.952 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.243 1.243 17 C -0.292 4.292 18 C 0.330 3.670 19 F -0.124 7.124 20 N -0.586 5.586 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.168 0.832 25 H 0.415 0.585 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.266 0.734 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 -13.213 0.005 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.052 3.948 3 C -0.281 4.281 4 C 0.162 3.838 5 N -0.344 5.344 6 C 0.000 4.000 7 C -0.140 4.140 8 C -0.049 4.049 9 C -0.571 4.571 10 H 0.052 0.948 11 C -0.194 4.194 12 N -0.593 5.593 13 Si 0.773 3.227 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.166 1.166 17 C -0.319 4.319 18 C 0.177 3.823 19 F -0.103 7.103 20 N -0.307 5.307 21 H 0.112 0.888 22 H 0.094 0.906 23 H 0.121 0.879 24 H 0.185 0.815 25 H 0.253 0.747 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.565 -13.913 0.011 22.408 hybrid contribution 1.584 0.720 -0.030 1.740 sum -15.981 -13.193 -0.020 20.724 Atomic orbital electron populations 1.20854 0.85673 1.04749 1.04452 1.21249 0.98056 0.85741 0.89799 1.21691 0.91706 1.01015 1.13683 1.17911 0.91419 0.86345 0.88166 1.44779 1.05896 1.05409 1.78271 1.21505 0.78743 0.98011 1.01748 1.21453 0.96059 0.94623 1.01878 1.19461 0.93507 0.94921 0.97034 1.21493 0.92236 0.93063 1.50355 0.94814 1.26039 1.00645 0.98590 0.94164 1.70067 1.14244 1.22328 1.52676 0.85661 0.77821 0.79987 0.79208 1.19215 1.21299 1.16614 1.21237 1.02062 0.90706 1.17889 1.17883 0.87812 0.80271 0.96300 1.91572 1.81147 1.44282 1.93337 1.66884 1.07936 1.32716 1.23149 0.88791 0.90563 0.87867 0.81485 0.74724 0.91499 0.91562 0.92129 0.92143 0.95772 0.95879 0.92524 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.17 71.24 0.72 -0.52 16 2 C 0.19 3.85 6.77 42.44 0.29 4.14 16 3 C -0.26 -4.84 9.62 22.49 0.22 -4.62 16 4 C 0.28 6.30 6.69 38.56 0.26 6.56 16 5 N -0.72 -15.70 5.72 -338.93 -1.94 -17.64 16 6 C 0.12 3.22 4.95 86.38 0.43 3.65 16 7 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 8 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 9 C -0.53 -29.55 9.66 25.60 0.25 -29.31 16 10 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 11 C 0.00 0.13 5.47 84.65 0.46 0.60 16 12 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 13 Si 0.95 42.96 27.47 68.60 1.88 44.84 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 17 C -0.29 -7.40 9.35 22.53 0.21 -7.19 16 18 C 0.33 9.15 8.40 84.63 0.71 9.86 16 19 F -0.12 -3.54 17.29 44.97 0.78 -2.76 16 20 N -0.59 -15.76 10.28 -185.25 -1.91 -17.66 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 0.77 8.07 -2.39 -0.02 0.75 16 24 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 25 H 0.42 7.63 8.50 -92.70 -0.79 6.84 16 26 H 0.07 1.72 7.98 -2.39 -0.02 1.70 16 27 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.02 1.01 7.20 -2.39 -0.02 1.00 16 31 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.15 3.53 6.89 -2.91 -0.02 3.51 16 Total: -1.00 -66.92 287.02 3.21 -63.71 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.27 Total: 8.53 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.83 Total: -20.42 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -3.54 Total: -93.90 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -66.92 3.21 -63.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429083.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -66.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds