Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38147 * 119.52347 * 2 1 4 4 C 1.38632 * 119.28703 * 179.73642 * 3 2 1 5 5 C 1.39130 * 118.38869 * 0.52665 * 4 3 2 6 6 N 1.39861 * 120.49755 * 179.71112 * 5 4 3 7 7 C 1.46499 * 120.00346 * 0.02698 * 6 5 4 8 8 C 1.52997 * 109.47544 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47605 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47560 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00062 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00397 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00402 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99827 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47352 * 89.99977 * 14 12 10 16 16 H 1.48504 * 109.47260 * 210.00059 * 14 12 10 17 17 H 1.48502 * 109.47275 * 329.99917 * 14 12 10 18 18 C 1.39189 * 119.00342 * 359.73540 * 5 4 3 19 19 F 1.35098 * 119.70018 * 179.97438 * 18 5 4 20 20 N 1.31947 * 119.52281 * 180.27124 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72714 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72312 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72942 * 1 2 3 24 24 H 1.07991 * 120.35712 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.80583 * 180.25961 * 4 3 2 26 26 H 0.97008 * 120.00282 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46806 * 299.99692 * 7 6 5 28 28 H 1.08996 * 109.47690 * 59.99472 * 7 6 5 29 29 H 1.09004 * 109.46915 * 299.99745 * 8 7 6 30 30 H 1.09007 * 109.47302 * 59.99535 * 8 7 6 31 31 H 1.08996 * 109.47420 * 300.00402 * 9 8 7 32 32 H 1.09007 * 109.46679 * 59.99755 * 9 8 7 33 33 H 0.96997 * 120.00487 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2021 0.0000 4 6 3.5741 1.1964 0.0056 5 6 4.2306 -0.0303 -0.0003 6 7 5.6280 -0.0875 -0.0011 7 6 6.4119 1.1502 0.0048 8 6 7.9034 0.8093 0.0032 9 6 8.7220 2.1019 0.0087 10 6 10.1911 1.7662 0.0077 11 1 10.5091 0.7341 0.0031 12 6 11.1292 2.7766 0.0126 13 7 12.4113 2.4836 0.0113 14 14 10.5792 4.5617 0.0213 15 1 10.4333 5.0280 1.4235 16 1 11.5922 5.3952 -0.6747 17 1 9.2747 4.6811 -0.6783 18 6 3.4757 -1.1997 -0.0058 19 9 4.0986 -2.3985 -0.0120 20 7 2.1573 -1.1481 -0.0054 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 0.8924 -0.5095 23 1 -0.3633 -0.8875 -0.5180 24 1 1.6459 2.1362 -0.0004 25 1 4.1311 2.1218 0.0099 26 1 6.0783 -0.9467 -0.0056 27 1 6.1718 1.7364 -0.8822 28 1 6.1725 1.7277 0.8977 29 1 8.1431 0.2232 0.8904 30 1 8.1431 0.2316 -0.8896 31 1 8.4822 2.6877 -0.8786 32 1 8.4823 2.6799 0.9013 33 1 13.0712 3.1944 0.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = -23.849774 kcal Electronic energy + Delta-G solvation = -15910.422021 eV Core-core repulsion = 13078.017732 eV Total energy + Delta-G solvation = -2832.404288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.87873 -40.23317 -36.91446 -34.04008 -32.26347 -32.16140 -30.84516 -27.93075 -25.77826 -23.98451 -22.87929 -21.52235 -20.43189 -17.83323 -17.70731 -16.81372 -16.48039 -16.15450 -14.99626 -14.85419 -14.53224 -14.03924 -14.01441 -13.78096 -13.19318 -12.88656 -12.76388 -12.53665 -12.25967 -12.10706 -11.96481 -11.16945 -11.08242 -10.54972 -10.15731 -9.96124 -9.83404 -9.68178 -9.54901 -9.30329 -8.62007 -7.50515 -6.11854 -4.11249 0.95202 1.19201 3.23841 3.24882 3.32640 3.34302 3.55318 3.61514 4.37628 4.37996 4.60973 4.80420 5.11083 5.21402 5.29856 5.39205 5.43729 5.45741 5.59375 5.75407 5.80474 5.89459 5.96029 6.23664 6.31349 6.50109 6.66817 7.07583 7.13291 7.26155 7.56775 7.68825 7.70419 8.44439 8.92187 9.49527 11.01504 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045085 B = 0.004233 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.897038 B = 6612.681251 C = 7202.527204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.084 3.916 3 C -0.125 4.125 4 C -0.137 4.137 5 C 0.158 3.842 6 N -0.730 5.730 7 C 0.117 3.883 8 C -0.114 4.114 9 C -0.009 4.009 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.265 1.265 18 C 0.227 3.773 19 F -0.119 7.119 20 N -0.475 5.475 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.140 0.860 25 H 0.145 0.855 26 H 0.406 0.594 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.634 -1.598 -0.036 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.146 4.146 4 C -0.168 4.168 5 C 0.048 3.952 6 N -0.357 5.357 7 C -0.007 4.007 8 C -0.152 4.152 9 C -0.047 4.047 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C 0.067 3.933 19 F -0.098 7.098 20 N -0.189 5.189 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.158 0.842 25 H 0.163 0.837 26 H 0.242 0.758 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.749 -2.143 -0.043 21.855 hybrid contribution 0.791 1.114 0.037 1.367 sum -20.958 -1.029 -0.006 20.983 Atomic orbital electron populations 1.20579 0.88496 1.03173 1.02780 1.20618 0.96521 0.86683 1.01727 1.21754 0.93861 0.99181 0.99789 1.21071 0.94416 0.96368 1.04940 1.18631 0.85798 0.93328 0.97409 1.44973 1.01071 1.10104 1.79595 1.21742 0.92625 0.85392 1.00898 1.21688 0.90325 1.01095 1.02072 1.19492 0.96017 0.92670 0.96525 1.21088 0.88622 0.95242 1.51290 0.90991 1.25039 0.94788 0.99216 0.94447 1.69906 1.00333 1.33034 1.50754 0.86759 0.78781 0.85075 0.78540 1.20230 1.21302 1.19015 1.17496 0.87253 0.79772 1.08747 1.91567 1.80565 1.43449 1.94253 1.66586 1.07323 1.31733 1.13228 0.90854 0.90786 0.90829 0.84245 0.83749 0.75800 0.92126 0.92137 0.91954 0.91933 0.96349 0.96789 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.08 0.95 6.78 -82.57 -0.56 0.39 16 3 C -0.13 -1.26 9.73 -39.47 -0.38 -1.64 16 4 C -0.14 -1.59 9.42 -39.10 -0.37 -1.96 16 5 C 0.16 2.15 6.68 -83.51 -0.56 1.59 16 6 N -0.73 -10.03 5.74 -58.45 -0.34 -10.36 16 7 C 0.12 1.70 4.95 -4.04 -0.02 1.68 16 8 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.32 16 10 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 14 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 18 C 0.23 3.32 8.43 -17.15 -0.14 3.18 16 19 F -0.12 -1.78 16.68 2.25 0.04 -1.74 16 20 N -0.47 -6.74 10.28 -9.66 -0.10 -6.84 16 21 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.14 1.48 6.89 -52.48 -0.36 1.12 16 26 H 0.41 5.42 7.98 -40.82 -0.33 5.10 16 27 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 28 H 0.06 0.84 7.99 -51.93 -0.41 0.43 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -30.93 286.09 -6.74 -37.67 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.40 Total: -0.07 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.35 Total: -12.71 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.34 Total: -43.87 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.93 -6.74 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.820 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds