Wall clock time and date at job start Sun Mar 29 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38147 * 119.52347 * 2 1 4 4 C 1.38632 * 119.28703 * 179.73642 * 3 2 1 5 5 C 1.39130 * 118.38869 * 0.52665 * 4 3 2 6 6 N 1.39861 * 120.49755 * 179.71112 * 5 4 3 7 7 C 1.46499 * 120.00346 * 0.02698 * 6 5 4 8 8 C 1.52997 * 109.47544 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47605 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47560 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00062 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00397 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00402 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99827 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47352 * 89.99977 * 14 12 10 16 16 H 1.48504 * 109.47260 * 210.00059 * 14 12 10 17 17 H 1.48502 * 109.47275 * 329.99917 * 14 12 10 18 18 C 1.39189 * 119.00342 * 359.73540 * 5 4 3 19 19 F 1.35098 * 119.70018 * 179.97438 * 18 5 4 20 20 N 1.31947 * 119.52281 * 180.27124 * 2 1 3 21 21 H 1.09001 * 109.46953 * 269.72714 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72312 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.72942 * 1 2 3 24 24 H 1.07991 * 120.35712 * 359.97438 * 3 2 1 25 25 H 1.08006 * 120.80583 * 180.25961 * 4 3 2 26 26 H 0.97008 * 120.00282 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46806 * 299.99692 * 7 6 5 28 28 H 1.08996 * 109.47690 * 59.99472 * 7 6 5 29 29 H 1.09004 * 109.46915 * 299.99745 * 8 7 6 30 30 H 1.09007 * 109.47302 * 59.99535 * 8 7 6 31 31 H 1.08996 * 109.47420 * 300.00402 * 9 8 7 32 32 H 1.09007 * 109.46679 * 59.99755 * 9 8 7 33 33 H 0.96997 * 120.00487 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1878 1.2021 0.0000 4 6 3.5741 1.1964 0.0056 5 6 4.2306 -0.0303 -0.0003 6 7 5.6280 -0.0875 -0.0011 7 6 6.4119 1.1502 0.0048 8 6 7.9034 0.8093 0.0032 9 6 8.7220 2.1019 0.0087 10 6 10.1911 1.7662 0.0077 11 1 10.5091 0.7341 0.0031 12 6 11.1292 2.7766 0.0126 13 7 12.4113 2.4836 0.0113 14 14 10.5792 4.5617 0.0213 15 1 10.4333 5.0280 1.4235 16 1 11.5922 5.3952 -0.6747 17 1 9.2747 4.6811 -0.6783 18 6 3.4757 -1.1997 -0.0058 19 9 4.0986 -2.3985 -0.0120 20 7 2.1573 -1.1481 -0.0054 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3634 0.8924 -0.5095 23 1 -0.3633 -0.8875 -0.5180 24 1 1.6459 2.1362 -0.0004 25 1 4.1311 2.1218 0.0099 26 1 6.0783 -0.9467 -0.0056 27 1 6.1718 1.7364 -0.8822 28 1 6.1725 1.7277 0.8977 29 1 8.1431 0.2232 0.8904 30 1 8.1431 0.2316 -0.8896 31 1 8.4822 2.6877 -0.8786 32 1 8.4823 2.6799 0.9013 33 1 13.0712 3.1944 0.0144 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:04 Heat of formation + Delta-G solvation = -44.322293 kcal Electronic energy + Delta-G solvation = -15911.309776 eV Core-core repulsion = 13078.017732 eV Total energy + Delta-G solvation = -2833.292044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.93619 -41.14503 -38.04160 -35.69229 -33.94062 -33.03543 -32.03302 -29.28564 -26.99138 -25.04941 -24.15429 -22.60994 -21.98564 -19.06796 -18.75741 -18.60494 -17.47732 -17.19579 -16.36988 -16.30327 -15.70757 -15.28813 -14.86044 -14.82856 -14.59677 -14.23035 -14.16680 -13.67849 -13.27452 -13.13930 -12.90667 -12.71796 -12.67610 -11.92918 -11.75808 -11.71366 -11.35607 -11.30631 -10.76679 -10.68634 -10.43651 -8.49480 -8.29497 -6.35055 0.04404 0.29303 1.38521 1.40780 1.52395 2.21301 2.37353 2.65582 2.67379 3.06338 3.51281 3.81163 3.95180 4.09701 4.18667 4.29413 4.51185 4.74058 4.78087 4.84517 4.88536 4.90214 4.99852 5.01556 5.11327 5.21497 5.43202 5.55037 5.59851 5.66033 6.08050 6.27188 6.50938 6.73962 6.80525 7.29978 8.87560 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045085 B = 0.004233 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.897038 B = 6612.681251 C = 7202.527204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.078 3.922 3 C -0.113 4.113 4 C -0.137 4.137 5 C 0.146 3.854 6 N -0.736 5.736 7 C 0.132 3.868 8 C -0.106 4.106 9 C -0.007 4.007 10 C -0.538 4.538 11 H 0.027 0.973 12 C -0.001 4.001 13 N -0.955 5.955 14 Si 0.956 3.044 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.238 1.238 18 C 0.196 3.804 19 F -0.133 7.133 20 N -0.503 5.503 21 H 0.085 0.915 22 H 0.103 0.897 23 H 0.066 0.934 24 H 0.181 0.819 25 H 0.163 0.837 26 H 0.404 0.596 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.653 1.132 -0.024 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.167 4.167 5 C 0.037 3.963 6 N -0.364 5.364 7 C 0.008 3.992 8 C -0.144 4.144 9 C -0.045 4.045 10 C -0.576 4.576 11 H 0.046 0.954 12 C -0.197 4.197 13 N -0.596 5.596 14 Si 0.779 3.221 15 H -0.191 1.191 16 H -0.214 1.214 17 H -0.161 1.161 18 C 0.038 3.962 19 F -0.113 7.113 20 N -0.218 5.218 21 H 0.103 0.897 22 H 0.122 0.878 23 H 0.085 0.915 24 H 0.198 0.802 25 H 0.181 0.819 26 H 0.239 0.761 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.799 0.562 -0.031 24.805 hybrid contribution 1.673 0.190 0.036 1.684 sum -23.126 0.752 0.005 23.138 Atomic orbital electron populations 1.20713 0.85991 1.04341 1.03869 1.21381 0.98246 0.86471 1.00093 1.22208 0.93369 1.00324 0.97373 1.21442 0.95345 0.96101 1.03818 1.18744 0.85396 0.93848 0.98328 1.44836 1.01362 1.09687 1.80548 1.21488 0.89843 0.85744 1.02096 1.21478 0.92685 0.98898 1.01314 1.19433 0.92888 0.94860 0.97326 1.21517 0.92024 0.93402 1.50623 0.95440 1.26125 0.94620 1.05002 0.93988 1.70083 1.02015 1.34861 1.52626 0.85573 0.79358 0.77895 0.79302 1.19060 1.21379 1.16056 1.17721 0.87815 0.79811 1.10902 1.91517 1.80870 1.44290 1.94577 1.66623 1.07299 1.33550 1.14305 0.89661 0.87825 0.91512 0.80151 0.81902 0.76097 0.90904 0.90853 0.92843 0.92855 0.95317 0.95455 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.17 71.24 0.72 -0.40 16 2 C 0.08 1.57 6.78 42.52 0.29 1.86 16 3 C -0.11 -1.81 9.73 22.34 0.22 -1.59 16 4 C -0.14 -2.72 9.42 22.58 0.21 -2.51 16 5 C 0.15 3.75 6.68 38.30 0.26 4.01 16 6 N -0.74 -19.51 5.74 -338.83 -1.95 -21.45 16 7 C 0.13 3.52 4.95 86.38 0.43 3.95 16 8 C -0.11 -3.74 5.27 30.59 0.16 -3.58 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.54 -30.37 9.66 25.60 0.25 -30.12 16 11 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 12 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 13 N -0.96 -59.76 13.96 21.45 0.30 -59.46 16 14 Si 0.96 42.53 27.47 68.60 1.88 44.41 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 18 C 0.20 5.70 8.43 84.90 0.72 6.42 16 19 F -0.13 -4.14 16.68 44.97 0.75 -3.39 16 20 N -0.50 -13.90 10.28 -184.47 -1.90 -15.79 16 21 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.18 1.38 8.06 -2.92 -0.02 1.36 16 25 H 0.16 2.61 6.89 -2.91 -0.02 2.59 16 26 H 0.40 10.90 7.98 -92.70 -0.74 10.16 16 27 H 0.07 1.79 7.99 -2.38 -0.02 1.77 16 28 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 29 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 32 H 0.03 1.12 7.57 -2.38 -0.02 1.10 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.47 286.09 3.24 -66.23 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.32 Total: 11.21 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 3.83 Total: -21.76 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.54 Total: -96.71 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.75 Total: -3.39 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Total: -69.47 3.24 -66.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.909 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds