Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36111 * 119.38531 * 2 1 4 4 H 0.96996 * 118.61578 * 0.02562 * 3 2 1 5 5 C 1.35829 * 122.78219 * 179.97438 * 3 2 1 6 6 C 1.34711 * 121.30877 * 359.72778 * 5 3 2 7 7 C 1.46789 * 118.57482 * 0.50202 * 6 5 3 8 8 N 1.32249 * 121.20583 * 179.78821 * 7 6 5 9 9 C 1.46500 * 119.99945 * 354.01332 * 8 7 6 10 10 C 1.52998 * 109.46785 * 115.91751 * 9 8 7 11 11 C 1.53009 * 109.46906 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46850 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00269 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99705 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99976 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47125 * 90.00626 * 16 14 12 18 18 H 1.48504 * 109.47227 * 210.00248 * 16 14 12 19 19 H 1.48498 * 109.47372 * 329.99926 * 16 14 12 20 20 C 1.34780 * 119.38347 * 179.97438 * 2 1 3 21 21 F 1.35101 * 120.74049 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.46861 * 270.02192 * 1 2 3 23 23 H 1.08999 * 109.47043 * 30.01757 * 1 2 3 24 24 H 1.08997 * 109.47459 * 150.01818 * 1 2 3 25 25 H 1.08000 * 119.34400 * 179.97438 * 5 3 2 26 26 H 1.07996 * 120.71471 * 180.26649 * 6 5 3 27 27 H 1.09002 * 109.46886 * 355.91749 * 9 8 7 28 28 H 1.09002 * 109.47080 * 235.91862 * 9 8 7 29 29 H 1.09002 * 109.47402 * 299.99914 * 10 9 8 30 30 H 1.09002 * 109.47410 * 60.00319 * 10 9 8 31 31 H 1.09002 * 109.47057 * 300.00171 * 11 10 9 32 32 H 1.09002 * 109.46788 * 59.99984 * 11 10 9 33 33 H 0.96997 * 120.00217 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1749 1.1860 0.0000 4 1 1.6609 2.0086 0.0004 5 6 3.5308 1.2665 0.0005 6 6 4.2978 0.1590 0.0065 7 6 3.6378 -1.1521 0.0013 8 7 4.3401 -2.2727 0.0026 9 6 5.7989 -2.2231 -0.1230 10 6 6.4395 -2.7654 1.1562 11 6 7.9631 -2.7141 1.0249 12 6 8.5941 -3.2488 2.2846 13 1 7.9710 -3.5913 3.0974 14 6 9.9671 -3.3017 2.3990 15 7 10.7261 -2.8851 1.4090 16 14 10.7494 -3.9638 3.9608 17 1 10.9525 -5.4290 3.8299 18 1 12.0599 -3.2999 4.1779 19 1 9.8578 -3.6888 5.1160 20 6 2.1683 -1.1744 0.0005 21 9 1.4954 -2.3459 0.0016 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5135 25 1 4.0033 2.2376 0.0001 26 1 5.3751 0.2342 0.0112 27 1 6.1152 -1.1917 -0.2788 28 1 6.1114 -2.8312 -0.9719 29 1 6.1271 -2.1572 2.0052 30 1 6.1232 -3.7968 1.3121 31 1 8.2753 -3.3225 0.1760 32 1 8.2798 -1.6829 0.8688 33 1 11.6920 -2.9220 1.4897 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = -9.908622 kcal Electronic energy + Delta-G solvation = -15986.834286 eV Core-core repulsion = 13155.034532 eV Total energy + Delta-G solvation = -2831.799755 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.50488 -40.00696 -36.18511 -33.66118 -32.80259 -31.69334 -29.60011 -28.03390 -26.18938 -23.30047 -22.80601 -20.77091 -19.84204 -18.81951 -17.34053 -16.43758 -16.08636 -15.73602 -15.36157 -14.42508 -14.21822 -14.04014 -13.89726 -13.45276 -13.22113 -12.97615 -12.65328 -12.45013 -12.09641 -11.61093 -11.23424 -11.00853 -10.77552 -10.49809 -10.24577 -9.63809 -9.34957 -9.30277 -9.00936 -8.63722 -8.28128 -7.03009 -5.93453 -3.95148 1.28731 1.51172 2.84894 3.36899 3.42300 3.46748 3.56269 4.02853 4.28926 4.51660 4.56936 4.92031 5.05450 5.12570 5.19770 5.42020 5.49588 5.60094 5.85726 5.98010 6.21127 6.25566 6.44804 6.51459 6.83971 6.91549 7.00954 7.15918 7.25326 7.75634 7.90803 8.07330 8.32052 8.52495 9.11825 9.68315 11.17967 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.044600 B = 0.004167 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.646144 B = 6718.599836 C = 6932.257856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.094 3.906 3 N -0.609 5.609 4 H 0.414 0.586 5 C 0.115 3.885 6 C -0.242 4.242 7 C 0.193 3.807 8 N -0.530 5.530 9 C 0.039 3.961 10 C -0.100 4.100 11 C 0.023 3.977 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.027 3.973 21 F -0.121 7.121 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.160 0.840 26 H 0.152 0.848 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.535 12.555 -4.470 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.014 4.014 3 N -0.220 5.220 4 H 0.249 0.751 5 C -0.011 4.011 6 C -0.270 4.270 7 C 0.011 3.989 8 N -0.242 5.242 9 C -0.090 4.090 10 C -0.138 4.138 11 C -0.015 4.015 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.000 4.000 21 F -0.100 7.100 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.177 0.823 26 H 0.170 0.830 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.280 11.416 -4.474 23.698 hybrid contribution 0.825 0.524 0.812 1.270 sum -19.455 11.940 -3.662 23.119 Atomic orbital electron populations 1.20862 0.88006 1.04463 1.03956 1.19544 0.94313 0.85331 1.02225 1.40488 1.05516 1.06905 1.69057 0.75147 1.21373 0.82146 1.00199 0.97430 1.22455 1.00863 0.91155 1.12533 1.21389 0.91061 0.90290 0.96202 1.73069 1.09193 1.25872 1.16114 1.22460 0.85991 1.00125 1.00421 1.21617 0.98347 1.00003 0.93836 1.19093 0.88207 0.97036 0.97171 1.21271 0.91398 1.41397 1.01482 0.92711 1.25024 0.97437 0.95603 0.96453 1.69969 1.04486 1.47693 1.31561 0.86590 0.78612 0.79069 0.83724 1.20642 1.21252 1.19897 1.17187 0.87875 0.80485 1.14495 1.91448 1.79080 1.45072 1.94400 0.89758 0.90623 0.89238 0.82262 0.83032 0.93967 0.90454 0.93800 0.92756 0.96499 0.96751 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.86 36.01 0.35 -0.33 16 2 C 0.09 0.91 6.82 -81.92 -0.56 0.35 16 3 N -0.61 -4.37 5.22 -9.34 -0.05 -4.42 16 4 H 0.41 1.27 8.72 -40.82 -0.36 0.91 16 5 C 0.11 1.00 11.13 -17.03 -0.19 0.81 16 6 C -0.24 -3.28 9.41 -37.38 -0.35 -3.63 16 7 C 0.19 3.28 6.98 -80.70 -0.56 2.72 16 8 N -0.53 -10.85 10.61 -55.77 -0.59 -11.45 16 9 C 0.04 0.82 6.25 -4.04 -0.03 0.79 16 10 C -0.10 -2.39 5.48 -26.73 -0.15 -2.53 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -15.53 9.11 -34.44 -0.31 -15.84 16 13 H 0.05 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 16 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.03 0.40 7.45 -37.27 -0.28 0.12 16 21 F -0.12 -1.91 16.35 2.25 0.04 -1.88 16 22 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.24 8.13 -51.93 -0.42 -0.18 16 24 H 0.09 0.58 7.56 -51.93 -0.39 0.19 16 25 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 26 H 0.15 2.13 6.03 -52.49 -0.32 1.82 16 27 H 0.04 0.82 5.33 -51.93 -0.28 0.54 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 287.95 15.07 4.34 4.34 Total: -1.00 -36.20 287.95 -7.12 -43.32 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -4.26 Total: -4.77 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.31 Total: -15.50 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.10 Total: -42.97 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -36.20 -7.12 -43.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.411 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds