Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36111 * 119.38531 * 2 1 4 4 H 0.96996 * 118.61578 * 0.02562 * 3 2 1 5 5 C 1.35829 * 122.78219 * 179.97438 * 3 2 1 6 6 C 1.34711 * 121.30877 * 359.72778 * 5 3 2 7 7 C 1.46789 * 118.57482 * 0.50202 * 6 5 3 8 8 N 1.32249 * 121.20583 * 179.78821 * 7 6 5 9 9 C 1.46500 * 119.99945 * 354.01332 * 8 7 6 10 10 C 1.52998 * 109.46785 * 115.91751 * 9 8 7 11 11 C 1.53009 * 109.46906 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46850 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00269 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99705 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99976 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47125 * 90.00626 * 16 14 12 18 18 H 1.48504 * 109.47227 * 210.00248 * 16 14 12 19 19 H 1.48498 * 109.47372 * 329.99926 * 16 14 12 20 20 C 1.34780 * 119.38347 * 179.97438 * 2 1 3 21 21 F 1.35101 * 120.74049 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.46861 * 270.02192 * 1 2 3 23 23 H 1.08999 * 109.47043 * 30.01757 * 1 2 3 24 24 H 1.08997 * 109.47459 * 150.01818 * 1 2 3 25 25 H 1.08000 * 119.34400 * 179.97438 * 5 3 2 26 26 H 1.07996 * 120.71471 * 180.26649 * 6 5 3 27 27 H 1.09002 * 109.46886 * 355.91749 * 9 8 7 28 28 H 1.09002 * 109.47080 * 235.91862 * 9 8 7 29 29 H 1.09002 * 109.47402 * 299.99914 * 10 9 8 30 30 H 1.09002 * 109.47410 * 60.00319 * 10 9 8 31 31 H 1.09002 * 109.47057 * 300.00171 * 11 10 9 32 32 H 1.09002 * 109.46788 * 59.99984 * 11 10 9 33 33 H 0.96997 * 120.00217 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1749 1.1860 0.0000 4 1 1.6609 2.0086 0.0004 5 6 3.5308 1.2665 0.0005 6 6 4.2978 0.1590 0.0065 7 6 3.6378 -1.1521 0.0013 8 7 4.3401 -2.2727 0.0026 9 6 5.7989 -2.2231 -0.1230 10 6 6.4395 -2.7654 1.1562 11 6 7.9631 -2.7141 1.0249 12 6 8.5941 -3.2488 2.2846 13 1 7.9710 -3.5913 3.0974 14 6 9.9671 -3.3017 2.3990 15 7 10.7261 -2.8851 1.4090 16 14 10.7494 -3.9638 3.9608 17 1 10.9525 -5.4290 3.8299 18 1 12.0599 -3.2999 4.1779 19 1 9.8578 -3.6888 5.1160 20 6 2.1683 -1.1744 0.0005 21 9 1.4954 -2.3459 0.0016 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8901 -0.5135 25 1 4.0033 2.2376 0.0001 26 1 5.3751 0.2342 0.0112 27 1 6.1152 -1.1917 -0.2788 28 1 6.1114 -2.8312 -0.9719 29 1 6.1271 -2.1572 2.0052 30 1 6.1232 -3.7968 1.3121 31 1 8.2753 -3.3225 0.1760 32 1 8.2798 -1.6829 0.8688 33 1 11.6920 -2.9220 1.4897 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = -36.624830 kcal Electronic energy + Delta-G solvation = -15987.992788 eV Core-core repulsion = 13155.034532 eV Total energy + Delta-G solvation = -2832.958256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.55821 -40.94884 -37.61413 -35.62646 -33.77144 -33.45533 -30.99144 -29.02786 -27.85390 -25.11237 -23.74192 -22.42334 -21.41076 -19.75765 -18.56272 -18.26164 -17.25051 -16.79017 -16.73176 -16.46731 -15.68682 -15.00081 -14.89071 -14.77559 -14.44834 -14.21541 -13.99062 -13.50686 -13.27866 -13.17744 -12.91299 -12.69806 -12.59325 -12.34196 -11.86852 -11.61703 -11.47391 -11.13303 -10.59363 -10.20545 -9.96319 -8.25842 -8.14514 -6.35506 0.29755 0.51772 1.36937 1.39851 1.51176 2.06014 2.38617 2.47805 3.03390 3.08590 3.48635 3.72164 3.98002 4.19293 4.19744 4.41524 4.48071 4.65644 4.69915 4.74305 4.89277 4.98969 5.07305 5.12391 5.14830 5.31937 5.44278 5.51810 5.66613 5.78370 5.97617 6.20800 6.44865 6.78485 7.11655 7.33326 8.88882 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.044600 B = 0.004167 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.646144 B = 6718.599836 C = 6932.257856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.148 3.852 3 N -0.579 5.579 4 H 0.444 0.556 5 C 0.168 3.832 6 C -0.299 4.299 7 C 0.199 3.801 8 N -0.614 5.614 9 C 0.058 3.942 10 C -0.082 4.082 11 C 0.031 3.969 12 C -0.549 4.549 13 H 0.053 0.947 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.274 1.274 19 H -0.265 1.265 20 C -0.043 4.043 21 F -0.140 7.140 22 H 0.103 0.897 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.217 0.783 26 H 0.137 0.863 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.037 0.963 31 H -0.008 1.008 32 H -0.002 1.002 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.772 15.877 -3.577 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.036 3.964 3 N -0.190 5.190 4 H 0.285 0.715 5 C 0.040 3.960 6 C -0.327 4.327 7 C 0.022 3.978 8 N -0.331 5.331 9 C -0.072 4.072 10 C -0.121 4.121 11 C -0.007 4.007 12 C -0.587 4.587 13 H 0.071 0.929 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.071 4.071 21 F -0.119 7.119 22 H 0.121 0.879 23 H 0.136 0.864 24 H 0.101 0.899 25 H 0.234 0.766 26 H 0.155 0.845 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.017 0.983 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.572 14.805 -3.589 27.232 hybrid contribution 1.244 -0.154 0.484 1.343 sum -21.328 14.651 -3.106 26.061 Atomic orbital electron populations 1.21098 0.84419 1.06309 1.05654 1.20092 0.96302 0.84332 0.95657 1.40853 1.05593 1.07646 1.64862 0.71459 1.22049 0.82163 1.00851 0.90977 1.22356 1.00967 0.91316 1.18104 1.22139 0.92628 0.91105 0.91978 1.73065 1.07578 1.27837 1.24601 1.22029 0.87868 0.99686 0.97589 1.21344 0.95878 0.99052 0.95788 1.18951 0.90777 0.95247 0.95720 1.21634 0.92374 1.42500 1.02214 0.92863 1.26012 0.97805 0.95426 1.00413 1.70094 1.05093 1.48147 1.33773 0.85377 0.77771 0.78579 0.78883 1.19686 1.19924 1.18953 1.17435 0.87079 0.81817 1.20768 1.91386 1.79035 1.46290 1.95168 0.87852 0.86387 0.89851 0.76612 0.84512 0.93279 0.92408 0.94408 0.94426 0.98997 0.98338 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.86 71.24 0.70 -0.10 16 2 C 0.15 2.28 6.82 41.10 0.28 2.56 16 3 N -0.58 -4.90 5.22 -183.45 -0.96 -5.86 16 4 H 0.44 -0.83 8.72 -92.71 -0.81 -1.64 16 5 C 0.17 2.14 11.13 83.26 0.93 3.07 16 6 C -0.30 -7.93 9.41 23.70 0.22 -7.70 16 7 C 0.20 7.05 6.98 43.61 0.30 7.35 16 8 N -0.61 -27.41 10.61 -330.36 -3.50 -30.92 16 9 C 0.06 2.67 6.25 86.38 0.54 3.21 16 10 C -0.08 -4.28 5.48 30.60 0.17 -4.12 16 11 C 0.03 1.82 4.97 29.85 0.15 1.97 16 12 C -0.55 -34.36 9.11 25.60 0.23 -34.13 16 13 H 0.05 3.26 7.74 -2.91 -0.02 3.24 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 16 Si 0.97 46.66 29.54 68.60 2.03 48.69 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.04 -1.24 7.45 23.76 0.18 -1.06 16 21 F -0.14 -4.60 16.35 44.97 0.74 -3.86 16 22 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 23 H 0.12 -0.10 8.13 -2.39 -0.02 -0.12 16 24 H 0.08 0.81 7.56 -2.39 -0.02 0.80 16 25 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 26 H 0.14 4.00 6.03 -2.91 -0.02 3.99 16 27 H 0.05 2.09 5.33 -2.39 -0.01 2.08 16 28 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -87.49 287.95 3.06 -84.43 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: 0.31 Total: -5.21 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 4.16 Total: -28.40 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.18 Total: -95.65 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.74 Total: -3.86 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -87.49 3.06 -84.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.809 kcal (2) G-P(sol) polarization free energy of solvation -87.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds