Wall clock time and date at job start Sun Mar 29 2020 21:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38553 * 120.42976 * 2 1 4 4 C 1.38700 * 118.45213 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.39049 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47136 * 270.02369 * 5 4 3 7 7 C 1.46897 * 111.00196 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47096 * 325.00265 * 7 6 5 9 9 C 1.53007 * 109.46874 * 84.99803 * 7 6 5 10 10 C 1.50695 * 109.47324 * 204.99610 * 7 6 5 11 11 H 1.07999 * 120.00102 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00176 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99898 * 0.02562 * 12 10 7 14 14 Si 1.86789 * 120.00220 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47304 * 60.00704 * 14 12 10 16 16 H 1.48501 * 109.47384 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47652 * 300.00648 * 14 12 10 18 18 C 1.38153 * 119.22145 * 359.97438 * 4 3 2 19 19 N 1.31904 * 120.79700 * 0.28339 * 18 4 3 20 20 C 1.32061 * 121.68540 * 359.42427 * 19 18 4 21 21 F 1.35103 * 119.64916 * 180.29543 * 20 19 18 22 22 H 1.09003 * 109.47193 * 89.99568 * 1 2 3 23 23 H 1.09001 * 109.47209 * 209.99750 * 1 2 3 24 24 H 1.09004 * 109.47044 * 330.00226 * 1 2 3 25 25 H 1.08000 * 120.77038 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.46819 * 30.02373 * 5 4 3 27 27 H 1.09001 * 109.47036 * 150.02360 * 5 4 3 28 28 H 1.00906 * 110.99862 * 303.95162 * 6 5 4 29 29 H 1.08995 * 109.47064 * 299.99855 * 9 7 6 30 30 H 1.08992 * 109.47077 * 60.00475 * 9 7 6 31 31 H 1.08999 * 109.47038 * 180.02562 * 9 7 6 32 32 H 0.97000 * 120.00128 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.59829 * 179.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1947 0.0000 4 6 3.5949 1.1468 -0.0005 5 6 4.4017 2.4197 -0.0011 6 7 4.6628 2.8332 -1.3863 7 6 5.4484 4.0739 -1.4261 8 1 5.1573 4.7151 -0.5941 9 6 6.9371 3.7386 -1.3149 10 6 5.1906 4.7902 -2.7267 11 1 4.5109 4.3664 -3.4511 12 6 5.8218 5.9871 -2.9914 13 7 6.6493 6.5034 -2.1091 14 14 5.5018 6.8753 -4.6031 15 1 4.0568 7.2005 -4.7107 16 1 6.2961 8.1294 -4.6434 17 1 5.8984 6.0021 -5.7369 18 6 4.2273 -0.0815 -0.0005 19 7 3.5292 -1.2006 -0.0056 20 6 2.2086 -1.1943 0.0004 21 9 1.5347 -2.3653 0.0009 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6884 2.1411 0.0004 26 1 3.8449 3.2029 0.5131 27 1 5.3483 2.2501 0.5120 28 1 5.1214 2.0977 -1.9029 29 1 7.1236 3.2205 -0.3743 30 1 7.2282 3.0974 -2.1468 31 1 7.5200 4.6591 -1.3440 32 1 7.0936 7.3452 -2.2954 33 1 5.3064 -0.1258 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179479159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:36 Heat of formation + Delta-G solvation = -16.414901 kcal Electronic energy + Delta-G solvation = -16261.309073 eV Core-core repulsion = 13429.227185 eV Total energy + Delta-G solvation = -2832.081888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.97831 -40.16145 -36.24417 -33.81929 -33.26208 -31.42001 -28.25730 -27.41022 -25.26520 -24.58073 -23.33439 -21.02446 -20.26653 -17.99197 -17.39882 -16.48371 -16.12010 -15.00291 -14.71501 -14.32650 -14.22715 -13.78902 -13.58393 -13.32632 -12.98764 -12.94669 -12.63353 -12.47062 -11.74871 -11.65197 -11.54593 -10.94786 -10.81228 -10.62831 -10.19940 -10.02885 -9.64844 -9.58635 -9.08525 -8.69163 -8.40146 -7.36084 -6.02771 -4.06439 0.92240 1.17257 3.32193 3.36349 3.39577 3.57693 3.62257 4.40794 4.47294 4.67394 4.78341 4.97257 5.16209 5.28949 5.41576 5.43692 5.50195 5.69884 5.83470 5.90533 6.00243 6.10416 6.37546 6.61526 6.66768 6.77787 7.01324 7.26037 7.65108 7.68555 7.81842 8.19355 8.41916 8.52497 9.00190 9.59105 11.04129 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039502 B = 0.004837 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.659272 B = 5787.233572 C = 6146.948424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.159 4.159 3 C -0.032 4.032 4 C -0.120 4.120 5 C 0.099 3.901 6 N -0.679 5.679 7 C 0.211 3.789 8 H 0.035 0.965 9 C -0.170 4.170 10 C -0.497 4.497 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.129 3.871 19 N -0.511 5.511 20 C 0.288 3.712 21 F -0.118 7.118 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.147 0.853 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.327 0.673 29 H 0.006 0.994 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -10.378 5.674 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C -0.058 4.058 4 C -0.123 4.123 5 C -0.031 4.031 6 N -0.308 5.308 7 C 0.104 3.896 8 H 0.053 0.947 9 C -0.230 4.230 10 C -0.536 4.536 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.028 4.028 19 N -0.225 5.225 20 C 0.135 3.865 21 F -0.097 7.097 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.165 0.835 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.144 0.856 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.130 -10.720 5.625 14.583 hybrid contribution 0.366 0.696 -0.617 1.000 sum -7.764 -10.024 5.008 13.632 Atomic orbital electron populations 1.20681 0.89380 1.03388 1.03103 1.20638 0.98175 0.92290 1.05120 1.21372 0.93362 0.97626 0.93482 1.21132 0.94810 0.97011 0.99355 1.20827 0.96733 0.91905 0.93603 1.60917 1.53724 1.07493 1.08713 1.19210 0.87078 0.85412 0.97893 0.94692 1.22445 1.02400 1.02131 0.95988 1.21092 1.25302 1.04883 1.02300 0.91992 1.24942 0.95197 0.97290 0.97022 1.69869 1.29337 1.19634 1.34859 0.86554 0.78229 0.78777 0.83772 1.20291 1.21433 1.20362 1.22417 0.99861 0.85767 0.94774 1.66974 1.06588 1.33505 1.15388 1.17956 0.87283 0.80847 1.00456 1.91570 1.78112 1.46513 1.93546 0.90514 0.91140 0.90655 0.83514 0.90301 0.94658 0.85626 0.97525 0.95232 0.89161 0.92955 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.86 36.00 0.35 -0.66 16 2 C -0.16 -2.00 5.90 -104.41 -0.62 -2.61 16 3 C -0.03 -0.42 9.54 -39.29 -0.37 -0.80 16 4 C -0.12 -1.71 5.41 -104.48 -0.57 -2.28 16 5 C 0.10 1.59 5.63 -4.98 -0.03 1.57 16 6 N -0.68 -13.43 6.22 -109.22 -0.68 -14.11 16 7 C 0.21 5.05 2.57 -68.86 -0.18 4.87 16 8 H 0.04 0.91 7.80 -51.93 -0.40 0.51 16 9 C -0.17 -3.90 8.94 37.16 0.33 -3.57 16 10 C -0.50 -13.34 8.84 -34.44 -0.30 -13.65 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 13 N -0.90 -25.04 11.32 55.43 0.63 -24.41 16 14 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.13 1.81 10.86 -17.55 -0.19 1.62 16 19 N -0.51 -7.85 10.37 -13.59 -0.14 -7.99 16 20 C 0.29 4.16 8.36 -17.35 -0.15 4.01 16 21 F -0.12 -1.66 16.51 2.25 0.04 -1.62 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.07 0.60 8.10 -51.93 -0.42 0.17 16 25 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 26 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 27 H 0.04 0.55 7.39 -51.93 -0.38 0.17 16 28 H 0.33 6.26 8.47 -39.29 -0.33 5.92 16 29 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 30 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -28.51 285.95 -6.97 -35.48 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.29 Total: 2.35 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.81 Total: -10.08 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.19 Total: -46.51 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.51 -6.97 -35.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179479159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.061 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds