Wall clock time and date at job start Sun Mar 29 2020 21:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38553 * 120.42976 * 2 1 4 4 C 1.38700 * 118.45213 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.39049 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47136 * 270.02369 * 5 4 3 7 7 C 1.46897 * 111.00196 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47096 * 325.00265 * 7 6 5 9 9 C 1.53007 * 109.46874 * 84.99803 * 7 6 5 10 10 C 1.50695 * 109.47324 * 204.99610 * 7 6 5 11 11 H 1.07999 * 120.00102 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00176 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99898 * 0.02562 * 12 10 7 14 14 Si 1.86789 * 120.00220 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47304 * 60.00704 * 14 12 10 16 16 H 1.48501 * 109.47384 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47652 * 300.00648 * 14 12 10 18 18 C 1.38153 * 119.22145 * 359.97438 * 4 3 2 19 19 N 1.31904 * 120.79700 * 0.28339 * 18 4 3 20 20 C 1.32061 * 121.68540 * 359.42427 * 19 18 4 21 21 F 1.35103 * 119.64916 * 180.29543 * 20 19 18 22 22 H 1.09003 * 109.47193 * 89.99568 * 1 2 3 23 23 H 1.09001 * 109.47209 * 209.99750 * 1 2 3 24 24 H 1.09004 * 109.47044 * 330.00226 * 1 2 3 25 25 H 1.08000 * 120.77038 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.46819 * 30.02373 * 5 4 3 27 27 H 1.09001 * 109.47036 * 150.02360 * 5 4 3 28 28 H 1.00906 * 110.99862 * 303.95162 * 6 5 4 29 29 H 1.08995 * 109.47064 * 299.99855 * 9 7 6 30 30 H 1.08992 * 109.47077 * 60.00475 * 9 7 6 31 31 H 1.08999 * 109.47038 * 180.02562 * 9 7 6 32 32 H 0.97000 * 120.00128 * 179.97438 * 13 12 10 33 33 H 1.08002 * 119.59829 * 179.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1947 0.0000 4 6 3.5949 1.1468 -0.0005 5 6 4.4017 2.4197 -0.0011 6 7 4.6628 2.8332 -1.3863 7 6 5.4484 4.0739 -1.4261 8 1 5.1573 4.7151 -0.5941 9 6 6.9371 3.7386 -1.3149 10 6 5.1906 4.7902 -2.7267 11 1 4.5109 4.3664 -3.4511 12 6 5.8218 5.9871 -2.9914 13 7 6.6493 6.5034 -2.1091 14 14 5.5018 6.8753 -4.6031 15 1 4.0568 7.2005 -4.7107 16 1 6.2961 8.1294 -4.6434 17 1 5.8984 6.0021 -5.7369 18 6 4.2273 -0.0815 -0.0005 19 7 3.5292 -1.2006 -0.0056 20 6 2.2086 -1.1943 0.0004 21 9 1.5347 -2.3653 0.0009 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6884 2.1411 0.0004 26 1 3.8449 3.2029 0.5131 27 1 5.3483 2.2501 0.5120 28 1 5.1214 2.0977 -1.9029 29 1 7.1236 3.2205 -0.3743 30 1 7.2282 3.0974 -2.1468 31 1 7.5200 4.6591 -1.3440 32 1 7.0936 7.3452 -2.2954 33 1 5.3064 -0.1258 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179479159.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:36 Heat of formation + Delta-G solvation = -34.289887 kcal Electronic energy + Delta-G solvation = -16262.084190 eV Core-core repulsion = 13429.227185 eV Total energy + Delta-G solvation = -2832.857006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.06003 -41.24546 -37.87474 -34.97800 -34.77435 -32.99740 -29.84990 -28.33355 -27.21951 -26.00124 -24.40209 -22.28140 -21.99792 -19.05662 -18.47958 -18.40958 -17.20642 -16.80645 -16.26325 -15.64690 -15.35336 -15.06344 -14.75173 -14.54356 -14.42607 -14.04333 -13.72502 -13.56575 -13.43365 -13.12291 -12.90115 -12.79012 -12.47656 -12.37973 -12.12530 -11.86752 -11.05923 -10.71343 -10.68380 -10.45276 -9.78129 -8.96581 -8.07214 -6.17860 -0.14883 0.11271 1.46307 1.46723 1.54601 2.44150 2.51697 2.56473 3.21608 3.44925 3.63313 3.73438 3.88786 3.95990 4.25115 4.42342 4.63844 4.72265 4.74965 4.81590 4.85780 4.93605 5.05383 5.11916 5.13952 5.26017 5.44604 5.62386 5.72679 5.84424 6.29409 6.57094 6.64563 6.80087 6.95960 7.51978 8.97669 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039502 B = 0.004837 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.659272 B = 5787.233572 C = 6146.948424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.151 4.151 3 C -0.034 4.034 4 C -0.125 4.125 5 C 0.106 3.894 6 N -0.682 5.682 7 C 0.216 3.784 8 H 0.010 0.990 9 C -0.159 4.159 10 C -0.515 4.515 11 H 0.053 0.947 12 C 0.011 3.989 13 N -0.921 5.921 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.127 3.873 19 N -0.534 5.534 20 C 0.273 3.727 21 F -0.119 7.119 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.162 0.838 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.332 0.668 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.260 0.740 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 -10.736 5.509 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.024 4.024 6 N -0.312 5.312 7 C 0.108 3.892 8 H 0.027 0.973 9 C -0.218 4.218 10 C -0.554 4.554 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.030 4.030 19 N -0.247 5.247 20 C 0.119 3.881 21 F -0.099 7.099 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.179 0.821 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.149 0.851 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.105 -11.099 5.466 15.361 hybrid contribution 0.625 0.753 -0.523 1.109 sum -8.480 -10.346 4.943 14.261 Atomic orbital electron populations 1.20787 0.87008 1.04703 1.04010 1.20898 0.99806 0.91217 1.03461 1.21598 0.93070 0.98497 0.92857 1.20953 0.95208 0.96095 1.00514 1.20756 0.97445 0.92728 0.91434 1.60740 1.52745 1.06438 1.11265 1.18954 0.88008 0.86635 0.95597 0.97251 1.22260 1.01275 1.00914 0.97377 1.21415 1.25113 1.05496 1.03343 0.92846 1.25656 0.95074 0.98076 0.99925 1.69991 1.29981 1.19851 1.36314 0.85630 0.78112 0.77682 0.80261 1.19909 1.21134 1.19934 1.22625 1.00591 0.85387 0.94425 1.66963 1.07357 1.34151 1.16263 1.18244 0.87359 0.81462 1.01000 1.91563 1.78046 1.46658 1.93594 0.89651 0.90440 0.88795 0.82091 0.90443 0.93843 0.85134 0.95055 0.95035 0.92073 0.93042 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.86 71.24 0.70 -1.04 16 2 C -0.15 -3.48 5.90 -19.72 -0.12 -3.60 16 3 C -0.03 -0.83 9.54 22.46 0.21 -0.62 16 4 C -0.13 -3.36 5.41 -19.77 -0.11 -3.47 16 5 C 0.11 3.26 5.63 85.56 0.48 3.74 16 6 N -0.68 -26.35 6.22 -499.47 -3.11 -29.46 16 7 C 0.22 10.30 2.57 44.17 0.11 10.41 16 8 H 0.01 0.50 7.80 -2.38 -0.02 0.48 16 9 C -0.16 -7.20 8.94 71.98 0.64 -6.56 16 10 C -0.51 -27.61 8.84 25.60 0.23 -27.38 16 11 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 12 C 0.01 0.59 5.30 84.65 0.45 1.04 16 13 N -0.92 -51.66 11.32 21.45 0.24 -51.42 16 14 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.13 3.38 10.86 84.66 0.92 4.30 16 19 N -0.53 -15.80 10.37 -196.92 -2.04 -17.84 16 20 C 0.27 7.50 8.36 84.72 0.71 8.20 16 21 F -0.12 -3.21 16.51 44.97 0.74 -2.47 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 24 H 0.09 1.18 8.10 -2.39 -0.02 1.16 16 25 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 26 H 0.08 2.41 8.01 -2.39 -0.02 2.39 16 27 H 0.04 1.28 7.39 -2.39 -0.02 1.26 16 28 H 0.33 12.30 8.47 -89.69 -0.76 11.54 16 29 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 30 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 32 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 33 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -59.79 285.95 2.45 -57.33 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.36 Total: 13.77 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.24 Total: -14.98 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.91 Total: -98.72 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.74 Total: -2.47 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -59.79 2.45 -57.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179479159.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.043 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds