Wall clock time and date at job start Sun Mar 29 2020 22:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00098 * 2 1 4 4 H 1.48504 * 109.47502 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47372 * 30.00066 * 3 2 1 6 6 H 1.48504 * 109.47056 * 149.99969 * 3 2 1 7 7 C 1.37874 * 119.99387 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00782 * 0.02562 * 7 2 1 10 10 C 1.53488 * 114.21069 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98745 * 220.14892 * 10 9 7 12 12 C 1.34775 * 136.05639 * 207.09004 * 11 10 9 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 C 1.54272 * 110.03485 * 272.44411 * 15 14 12 17 17 C 1.54889 * 104.19819 * 217.10629 * 16 15 14 18 18 C 1.54887 * 102.74865 * 37.94293 * 17 16 15 19 19 C 1.53878 * 110.03156 * 155.27874 * 15 14 12 20 20 C 1.47065 * 87.88431 * 27.33847 * 11 10 9 21 21 H 0.97004 * 119.99956 * 0.02562 * 1 2 3 22 22 H 1.09005 * 113.27471 * 313.06734 * 9 7 2 23 23 H 1.09000 * 113.47258 * 105.36550 * 10 9 7 24 24 H 1.09006 * 113.51720 * 334.93732 * 10 9 7 25 25 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 26 26 H 1.09000 * 110.02169 * 33.88698 * 15 14 12 27 27 H 1.09006 * 110.48347 * 335.78754 * 16 15 14 28 28 H 1.09003 * 110.48577 * 98.42799 * 16 15 14 29 29 H 1.09000 * 110.75187 * 279.62806 * 17 16 15 30 30 H 1.08998 * 110.75444 * 156.25777 * 17 16 15 31 31 H 1.08999 * 110.48907 * 203.38356 * 18 17 16 32 32 H 1.08996 * 110.49072 * 80.73104 * 18 17 16 33 33 H 1.09003 * 110.03007 * 238.56318 * 19 15 14 34 34 H 1.08995 * 110.02953 * 359.95428 * 19 15 14 35 35 H 1.09000 * 113.46383 * 87.43707 * 20 11 10 36 36 H 1.08997 * 113.47164 * 217.88264 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4993 0.0005 10 6 2.1486 -3.7443 0.0018 11 7 1.2078 -4.3598 -0.9463 12 6 0.8326 -5.6145 -1.2647 13 8 1.3301 -6.5625 -0.6885 14 7 -0.0942 -5.8183 -2.2218 15 6 -0.4976 -7.1824 -2.5721 16 6 0.4412 -7.7490 -3.6572 17 6 -0.4912 -8.5880 -4.5660 18 6 -1.7848 -7.7372 -4.6066 19 6 -1.9130 -7.1749 -3.1758 20 6 0.8613 -3.0040 -1.3986 21 1 -0.4850 0.8401 -0.0004 22 1 0.4431 -2.5302 0.7318 23 1 2.1868 -4.2510 0.9661 24 1 3.1377 -3.5678 -0.4209 25 1 -0.4909 -5.0620 -2.6818 26 1 -0.4726 -7.8179 -1.6869 27 1 0.9002 -6.9396 -4.2250 28 1 1.2060 -8.3821 -3.2073 29 1 -0.6851 -9.5650 -4.1233 30 1 -0.0660 -8.6924 -5.5642 31 1 -2.6446 -8.3615 -4.8495 32 1 -1.6854 -6.9259 -5.3277 33 1 -2.5747 -7.8074 -2.5840 34 1 -2.3000 -6.1564 -3.2073 35 1 1.5108 -2.6315 -2.1907 36 1 -0.1972 -2.8799 -1.6272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185864584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:10 Heat of formation + Delta-G solvation = -8.379921 kcal Electronic energy + Delta-G solvation = -16908.470887 eV Core-core repulsion = 14200.197727 eV Total energy + Delta-G solvation = -2708.273160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78956 -38.29607 -36.73975 -33.22453 -32.63455 -29.27569 -28.77401 -27.08193 -24.92579 -24.77559 -20.95813 -20.68936 -20.11027 -18.95008 -17.20493 -16.53550 -16.25019 -15.37226 -15.01028 -14.67023 -14.38125 -13.92230 -13.42690 -13.23545 -12.70050 -12.20386 -11.97241 -11.51385 -11.48716 -11.24819 -11.23398 -11.12704 -10.96119 -10.81561 -10.73320 -10.69254 -10.31376 -9.75254 -9.19407 -9.06894 -8.73092 -8.57452 -7.70078 -6.17672 -4.22958 3.14792 3.24013 3.31857 3.35374 3.79914 4.32529 4.46347 4.58103 4.61437 4.85133 5.12719 5.34144 5.43237 5.49917 5.51813 5.58728 5.74261 5.80552 5.95675 6.01912 6.15041 6.19368 6.23706 6.26016 6.32640 6.48478 6.55107 6.66941 6.78008 6.96544 7.57711 7.80547 7.82719 8.20253 8.79481 8.81353 9.21870 9.43927 10.92165 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.004790 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.374018 B = 5843.574856 C = 6149.975539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.035 3.965 10 C 0.121 3.879 11 N -0.666 5.666 12 C 0.726 3.274 13 O -0.611 6.611 14 N -0.744 5.744 15 C 0.161 3.839 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.133 4.133 20 C 0.100 3.900 21 H 0.264 0.736 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.394 0.606 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -10.668 -8.617 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.016 3.984 10 C -0.002 4.002 11 N -0.404 5.404 12 C 0.430 3.570 13 O -0.492 6.492 14 N -0.399 5.399 15 C 0.055 3.945 16 C -0.175 4.175 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.023 4.023 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.228 0.772 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.449 -11.453 -8.221 14.514 hybrid contribution 0.194 1.309 -0.401 1.383 sum -3.255 -10.144 -8.622 13.705 Atomic orbital electron populations 1.69957 1.06085 1.27073 1.49257 1.25024 0.94855 0.99380 0.94262 0.86536 0.79937 0.82993 0.78219 1.20549 1.21147 1.19663 1.20929 0.93042 0.89596 1.51884 0.91832 1.20384 0.94813 0.91078 0.92135 1.23189 0.93745 0.92370 0.90888 1.49110 1.45159 1.03365 1.42750 1.15416 0.79864 0.81925 0.79839 1.90827 1.60470 1.40581 1.57354 1.45236 1.45228 1.08120 1.41301 1.21384 0.92487 0.82946 0.97675 1.22835 0.98179 0.99621 0.96845 1.22478 0.95561 0.98539 0.99618 1.22348 0.97876 0.99332 0.96529 1.22456 0.96243 1.02005 0.96377 1.23551 0.99219 0.77420 1.02063 0.92680 0.91378 0.92616 0.91285 0.77182 0.89421 0.91278 0.91231 0.91409 0.91593 0.91606 0.91538 0.90869 0.90993 0.91229 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 13.26 55.43 0.74 -23.41 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.52 -13.20 8.83 -34.44 -0.30 -13.50 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.04 0.84 3.79 -91.13 -0.35 0.49 16 10 C 0.12 2.61 8.17 -8.51 -0.07 2.54 16 11 N -0.67 -14.12 3.69 -190.87 -0.70 -14.82 16 12 C 0.73 15.11 8.79 -86.92 -0.76 14.34 16 13 O -0.61 -14.56 16.78 5.29 0.09 -14.47 16 14 N -0.74 -12.14 5.04 -57.58 -0.29 -12.43 16 15 C 0.16 2.21 3.24 -66.81 -0.22 1.99 16 16 C -0.14 -1.70 6.53 -25.07 -0.16 -1.86 16 17 C -0.12 -1.17 6.91 -24.74 -0.17 -1.35 16 18 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 19 C -0.13 -1.40 6.57 -25.61 -0.17 -1.56 16 20 C 0.10 2.13 7.87 -8.38 -0.07 2.06 16 21 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 22 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 25 H 0.39 5.83 8.04 -40.82 -0.33 5.51 16 26 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 27 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 7.62 -51.93 -0.40 0.36 16 35 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -29.29 299.46 -8.94 -38.23 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.72 Total: 3.80 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -2.54 Total: 3.56 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.26 Total: -50.66 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.29 -8.94 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds