Wall clock time and date at job start Sun Mar 29 2020 22:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00098 * 2 1 4 4 H 1.48504 * 109.47502 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47372 * 30.00066 * 3 2 1 6 6 H 1.48504 * 109.47056 * 149.99969 * 3 2 1 7 7 C 1.37874 * 119.99387 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00782 * 0.02562 * 7 2 1 10 10 C 1.53488 * 114.21069 * 180.02562 * 9 7 2 11 11 N 1.47067 * 87.98745 * 220.14892 * 10 9 7 12 12 C 1.34775 * 136.05639 * 207.09004 * 11 10 9 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 C 1.54272 * 110.03485 * 272.44411 * 15 14 12 17 17 C 1.54889 * 104.19819 * 217.10629 * 16 15 14 18 18 C 1.54887 * 102.74865 * 37.94293 * 17 16 15 19 19 C 1.53878 * 110.03156 * 155.27874 * 15 14 12 20 20 C 1.47065 * 87.88431 * 27.33847 * 11 10 9 21 21 H 0.97004 * 119.99956 * 0.02562 * 1 2 3 22 22 H 1.09005 * 113.27471 * 313.06734 * 9 7 2 23 23 H 1.09000 * 113.47258 * 105.36550 * 10 9 7 24 24 H 1.09006 * 113.51720 * 334.93732 * 10 9 7 25 25 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 26 26 H 1.09000 * 110.02169 * 33.88698 * 15 14 12 27 27 H 1.09006 * 110.48347 * 335.78754 * 16 15 14 28 28 H 1.09003 * 110.48577 * 98.42799 * 16 15 14 29 29 H 1.09000 * 110.75187 * 279.62806 * 17 16 15 30 30 H 1.08998 * 110.75444 * 156.25777 * 17 16 15 31 31 H 1.08999 * 110.48907 * 203.38356 * 18 17 16 32 32 H 1.08996 * 110.49072 * 80.73104 * 18 17 16 33 33 H 1.09003 * 110.03007 * 238.56318 * 19 15 14 34 34 H 1.08995 * 110.02953 * 359.95428 * 19 15 14 35 35 H 1.09000 * 113.46383 * 87.43707 * 20 11 10 36 36 H 1.08997 * 113.47164 * 217.88264 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4993 0.0005 10 6 2.1486 -3.7443 0.0018 11 7 1.2078 -4.3598 -0.9463 12 6 0.8326 -5.6145 -1.2647 13 8 1.3301 -6.5625 -0.6885 14 7 -0.0942 -5.8183 -2.2218 15 6 -0.4976 -7.1824 -2.5721 16 6 0.4412 -7.7490 -3.6572 17 6 -0.4912 -8.5880 -4.5660 18 6 -1.7848 -7.7372 -4.6066 19 6 -1.9130 -7.1749 -3.1758 20 6 0.8613 -3.0040 -1.3986 21 1 -0.4850 0.8401 -0.0004 22 1 0.4431 -2.5302 0.7318 23 1 2.1868 -4.2510 0.9661 24 1 3.1377 -3.5678 -0.4209 25 1 -0.4909 -5.0620 -2.6818 26 1 -0.4726 -7.8179 -1.6869 27 1 0.9002 -6.9396 -4.2250 28 1 1.2060 -8.3821 -3.2073 29 1 -0.6851 -9.5650 -4.1233 30 1 -0.0660 -8.6924 -5.5642 31 1 -2.6446 -8.3615 -4.8495 32 1 -1.6854 -6.9259 -5.3277 33 1 -2.5747 -7.8074 -2.5840 34 1 -2.3000 -6.1564 -3.2073 35 1 1.5108 -2.6315 -2.1907 36 1 -0.1972 -2.8799 -1.6272 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185864584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:10 Heat of formation + Delta-G solvation = -26.041572 kcal Electronic energy + Delta-G solvation = -16909.236754 eV Core-core repulsion = 14200.197727 eV Total energy + Delta-G solvation = -2709.039027 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37667 -39.64892 -38.21992 -34.73807 -34.45798 -30.93567 -29.65183 -28.37097 -26.73176 -26.50097 -22.57510 -21.56582 -21.27189 -20.56132 -18.95726 -18.35761 -17.58157 -16.67641 -16.46821 -16.16766 -15.96404 -15.39637 -14.66893 -14.37722 -14.27258 -14.02991 -13.28250 -13.24883 -12.98549 -12.78250 -12.56779 -12.45585 -12.17911 -12.02581 -11.94439 -11.76538 -11.55939 -11.45447 -11.04836 -10.93795 -10.52869 -10.18316 -9.37588 -8.15692 -6.26754 1.48460 1.50431 1.59353 1.63965 2.14905 2.47001 3.02390 3.15949 3.60992 3.72344 3.99486 4.23220 4.39801 4.44744 4.50046 4.52664 4.56480 4.62544 4.71940 4.75689 4.79479 4.90279 4.93282 4.99715 5.05428 5.18035 5.23135 5.28786 5.46078 5.60669 5.68154 5.82514 6.24673 6.33458 6.81935 7.13895 7.42800 7.60095 8.94437 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.004790 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.374018 B = 5843.574856 C = 6149.975539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.024 3.976 10 C 0.126 3.874 11 N -0.669 5.669 12 C 0.720 3.280 13 O -0.645 6.645 14 N -0.729 5.729 15 C 0.152 3.848 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.127 4.127 20 C 0.117 3.883 21 H 0.265 0.735 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.403 0.597 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.872 -10.753 -10.199 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.085 0.915 9 C 0.005 3.995 10 C 0.003 3.997 11 N -0.407 5.407 12 C 0.424 3.576 13 O -0.529 6.529 14 N -0.384 5.384 15 C 0.047 3.953 16 C -0.174 4.174 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.165 4.165 20 C -0.005 4.005 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.239 0.761 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.757 -11.550 -9.834 15.628 hybrid contribution 0.278 1.276 0.127 1.312 sum -3.479 -10.274 -9.708 14.556 Atomic orbital electron populations 1.70062 1.07442 1.27844 1.50370 1.25752 0.95557 1.02527 0.93978 0.85535 0.78683 0.78938 0.78376 1.19829 1.21280 1.19142 1.21215 0.93359 0.90453 1.51580 0.91515 1.20261 0.94598 0.91624 0.93048 1.23089 0.94016 0.91368 0.91250 1.49064 1.45219 1.03601 1.42779 1.15624 0.80412 0.81176 0.80403 1.90799 1.61864 1.41403 1.58792 1.45247 1.43623 1.09723 1.39793 1.21660 0.95087 0.81094 0.97466 1.22789 0.98180 0.99616 0.96861 1.22464 0.94994 0.98385 0.99556 1.22347 0.98248 0.99606 0.95219 1.22442 0.93862 1.02660 0.97521 1.23302 0.99511 0.77090 1.00618 0.92655 0.94337 0.92832 0.90116 0.76096 0.91649 0.91933 0.92961 0.90581 0.90155 0.89491 0.91032 0.89784 0.90720 0.90469 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 13.26 21.45 0.28 -49.89 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.96 40.65 29.54 68.60 2.03 42.68 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.53 -26.87 8.83 25.60 0.23 -26.64 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.26 16 9 C 0.02 1.16 3.79 -11.12 -0.04 1.11 16 10 C 0.13 5.44 8.17 83.17 0.68 6.12 16 11 N -0.67 -28.26 3.69 -876.06 -3.23 -31.49 16 12 C 0.72 30.00 8.79 179.05 1.57 31.58 16 13 O -0.64 -31.11 16.78 -3.98 -0.07 -31.18 16 14 N -0.73 -23.38 5.04 -454.34 -2.29 -25.67 16 15 C 0.15 4.06 3.24 45.72 0.15 4.21 16 16 C -0.14 -3.26 6.53 31.67 0.21 -3.06 16 17 C -0.12 -1.91 6.91 31.88 0.22 -1.69 16 18 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 19 C -0.13 -2.39 6.57 31.32 0.21 -2.19 16 20 C 0.12 4.94 7.87 83.26 0.66 5.59 16 21 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 22 H 0.04 2.06 8.11 -2.38 -0.02 2.04 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.08 3.29 8.10 -2.38 -0.02 3.27 16 25 H 0.40 11.47 8.04 -92.71 -0.75 10.73 16 26 H 0.07 2.05 7.57 -2.39 -0.02 2.03 16 27 H 0.06 1.58 8.05 -2.38 -0.02 1.56 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.39 7.62 -2.39 -0.02 1.37 16 35 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -62.23 299.46 1.59 -60.64 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.31 Total: 19.77 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 4.55 Total: 15.14 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.24 Total: -107.05 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.07 Total: -31.18 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -62.23 1.59 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.602 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds