Wall clock time and date at job start Sun Mar 29 2020 21:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38540 * 120.77418 * 2 1 4 4 C 1.38523 * 119.13850 * 179.73411 * 3 2 1 5 5 F 1.35106 * 119.64861 * 180.27113 * 4 3 2 6 6 N 1.32060 * 120.70022 * 0.54813 * 4 3 2 7 7 C 1.31903 * 121.68492 * 359.72451 * 6 4 3 8 8 C 1.38150 * 120.80152 * 359.97438 * 7 6 4 9 9 C 1.50694 * 120.39011 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47059 * 259.98011 * 9 8 7 11 11 C 1.46905 * 110.99680 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47347 * 324.99493 * 11 10 9 13 13 C 1.52997 * 109.46899 * 85.00158 * 11 10 9 14 14 C 1.50699 * 109.46843 * 205.00034 * 11 10 9 15 15 H 1.08005 * 120.00271 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00242 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99395 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00339 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.46860 * 89.99606 * 18 16 14 20 20 H 1.48495 * 109.47047 * 210.00183 * 18 16 14 21 21 H 1.48499 * 109.46628 * 329.99939 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72260 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72361 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72342 * 1 2 3 25 25 H 1.08003 * 120.43085 * 359.97029 * 3 2 1 26 26 H 1.08002 * 119.60034 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46975 * 19.97580 * 9 8 7 28 28 H 1.09002 * 109.47149 * 139.97896 * 9 8 7 29 29 H 1.00901 * 111.00051 * 56.04460 * 10 9 8 30 30 H 1.09002 * 109.47287 * 299.99332 * 13 11 10 31 31 H 1.08993 * 109.47376 * 59.99530 * 13 11 10 32 32 H 1.09002 * 109.47000 * 180.02562 * 13 11 10 33 33 H 0.97003 * 119.99629 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1903 0.0000 4 6 3.6005 1.1508 0.0056 5 9 4.3021 2.3054 0.0112 6 7 4.2421 -0.0035 0.0001 7 6 3.5976 -1.1543 -0.0056 8 6 2.2166 -1.1918 -0.0053 9 6 1.4898 -2.5118 -0.0112 10 7 1.0421 -2.8182 -1.3764 11 6 0.3283 -4.1015 -1.4207 12 1 0.7782 -4.7923 -0.7076 13 6 -1.1416 -3.8801 -1.0587 14 6 0.4221 -4.6807 -2.8088 15 1 0.9580 -4.1485 -3.5809 16 6 -0.1770 -5.8894 -3.0934 17 7 -0.8299 -6.5371 -2.1533 18 14 -0.0614 -6.6070 -4.8142 19 1 1.1467 -7.4649 -4.9125 20 1 -1.2712 -7.4217 -5.0930 21 1 0.0323 -5.5047 -5.8048 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6957 2.1368 -0.0005 26 1 4.1563 -2.0786 -0.0104 27 1 2.1607 -3.2975 0.3361 28 1 0.6253 -2.4536 0.6502 29 1 1.8183 -2.8141 -2.0210 30 1 -1.2095 -3.4612 -0.0546 31 1 -1.5914 -3.1893 -1.7717 32 1 -1.6711 -4.8323 -1.0911 33 1 -1.2511 -7.3877 -2.3534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203523058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:41 Heat of formation + Delta-G solvation = -16.725942 kcal Electronic energy + Delta-G solvation = -16471.921141 eV Core-core repulsion = 13639.825765 eV Total energy + Delta-G solvation = -2832.095376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.95137 -40.21333 -36.20740 -34.06684 -32.79204 -31.06059 -28.49777 -27.67709 -25.51713 -24.57704 -22.74549 -21.29980 -19.86367 -17.47406 -17.41257 -16.72011 -16.02289 -15.25177 -14.85869 -14.36577 -14.26471 -14.02446 -13.63525 -13.24112 -12.82058 -12.59622 -12.49465 -12.24071 -11.85922 -11.62700 -11.21888 -10.91987 -10.84303 -10.36777 -10.21516 -10.12292 -9.54784 -9.50271 -8.96049 -8.72960 -8.53547 -7.42481 -6.09170 -4.15866 0.96870 1.17658 3.25956 3.33098 3.36786 3.59928 3.64825 4.35582 4.50294 4.78078 4.88875 4.93706 5.22280 5.31678 5.51430 5.56624 5.72237 5.74716 5.80296 5.98505 6.14757 6.30611 6.50868 6.71310 6.78014 7.03053 7.11888 7.38745 7.68717 7.70980 7.79841 8.17792 8.26045 8.54409 8.93390 9.50646 10.97024 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039860 B = 0.005148 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.297503 B = 5437.937240 C = 5741.769147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.009 3.991 3 C -0.200 4.200 4 C 0.295 3.705 5 F -0.120 7.120 6 N -0.521 5.521 7 C 0.138 3.862 8 C -0.132 4.132 9 C 0.100 3.900 10 N -0.682 5.682 11 C 0.211 3.789 12 H 0.003 0.997 13 C -0.125 4.125 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.074 0.926 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.143 0.857 26 H 0.165 0.835 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.333 0.667 30 H 0.004 0.996 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 11.201 5.528 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 C -0.221 4.221 4 C 0.142 3.858 5 F -0.099 7.099 6 N -0.235 5.235 7 C -0.018 4.018 8 C -0.135 4.135 9 C -0.030 4.030 10 N -0.313 5.313 11 C 0.104 3.896 12 H 0.021 0.979 13 C -0.184 4.184 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.093 0.907 23 H 0.122 0.878 24 H 0.087 0.913 25 H 0.161 0.839 26 H 0.182 0.818 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.150 0.850 30 H 0.023 0.977 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.522 11.449 5.608 13.226 hybrid contribution 0.138 -0.773 -0.820 1.135 sum 3.659 10.676 4.788 12.259 Atomic orbital electron populations 1.20992 0.89193 1.05217 1.02826 1.20114 0.97476 0.90944 0.91350 1.21695 0.92512 1.00428 1.07504 1.18113 0.86810 0.81737 0.99157 1.91590 1.80068 1.44743 1.93522 1.66985 1.42287 0.97891 1.16370 1.22456 0.91309 0.94245 0.93798 1.21043 0.94476 0.96893 1.01100 1.20808 0.97516 0.90146 0.94506 1.60812 1.29476 1.37613 1.03429 1.19140 0.90978 0.83056 0.96393 0.97930 1.21732 0.99221 1.01752 0.95648 1.21236 1.34323 1.04517 0.95757 0.92200 1.24905 0.94987 0.96778 0.97222 1.69888 1.34924 1.15443 1.32543 0.86520 0.77500 0.79076 0.84460 1.20730 1.21184 1.19851 0.90721 0.87773 0.91293 0.83923 0.81825 0.94740 0.90287 0.84955 0.97669 0.94883 0.90021 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.36 36.01 0.34 -1.17 16 2 C 0.01 0.13 5.92 -104.34 -0.62 -0.49 16 3 C -0.20 -2.54 9.79 -39.36 -0.39 -2.93 16 4 C 0.30 4.28 8.41 -17.35 -0.15 4.14 16 5 F -0.12 -1.71 17.29 2.25 0.04 -1.67 16 6 N -0.52 -8.06 10.37 -13.59 -0.14 -8.20 16 7 C 0.14 1.96 10.82 -17.55 -0.19 1.77 16 8 C -0.13 -1.91 5.41 -104.49 -0.57 -2.47 16 9 C 0.10 1.60 4.78 -4.98 -0.02 1.58 16 10 N -0.68 -13.19 5.73 -109.22 -0.63 -13.82 16 11 C 0.21 4.99 2.60 -68.86 -0.18 4.81 16 12 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 13 C -0.13 -2.89 9.19 37.16 0.34 -2.55 16 14 C -0.52 -13.63 8.59 -34.44 -0.30 -13.93 16 15 H 0.06 1.56 7.62 -52.48 -0.40 1.16 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.10 1.51 6.54 -51.93 -0.34 1.17 16 24 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 26 H 0.16 2.00 8.04 -52.49 -0.42 1.57 16 27 H 0.03 0.55 7.93 -51.93 -0.41 0.14 16 28 H 0.08 1.26 6.68 -51.93 -0.35 0.91 16 29 H 0.33 6.50 8.21 -39.29 -0.32 6.18 16 30 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 282.83 15.07 4.26 4.26 Total: -1.00 -27.74 282.83 -6.85 -34.59 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.17 Total: 2.69 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.82 Total: -9.65 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.14 Total: -45.94 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.74 -6.85 -34.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203523058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.869 kcal (2) G-P(sol) polarization free energy of solvation -27.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds