Wall clock time and date at job start Sun Mar 29 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47257 * 2 1 4 4 C 1.52997 * 109.47204 * 120.00726 * 2 1 3 5 5 C 1.50708 * 109.47127 * 185.00138 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 O 1.42904 * 109.46611 * 240.00267 * 2 1 3 11 11 C 1.42899 * 114.00034 * 90.00454 * 10 2 1 12 12 C 1.52996 * 109.47357 * 179.97438 * 11 10 2 13 13 C 1.53001 * 109.47448 * 179.97438 * 12 11 10 14 14 C 1.50688 * 109.47203 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00361 * 359.97438 * 14 13 12 16 16 C 1.37887 * 120.00013 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99928 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99899 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46678 * 90.00268 * 18 16 14 20 20 H 1.48494 * 109.47538 * 210.00260 * 18 16 14 21 21 H 1.48493 * 109.47295 * 330.00757 * 18 16 14 22 22 H 1.08998 * 109.46926 * 299.99559 * 1 2 3 23 23 H 1.08998 * 109.47050 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47369 * 64.99590 * 4 2 1 26 26 H 1.09005 * 109.46999 * 304.99406 * 4 2 1 27 27 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 28 28 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 29 29 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47061 * 299.99557 * 11 10 2 31 31 H 1.09001 * 109.47663 * 59.98843 * 11 10 2 32 32 H 1.08998 * 109.47137 * 299.99501 * 12 11 10 33 33 H 1.09000 * 109.47093 * 59.99817 * 12 11 10 34 34 H 1.08998 * 109.46796 * 300.00018 * 13 12 11 35 35 H 1.08999 * 109.46849 * 59.99202 * 13 12 11 36 36 H 0.97003 * 119.99929 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3126 6 6 4.2363 0.3657 1.9170 7 6 5.6068 0.0704 1.7334 8 6 5.6678 -1.0735 1.0283 9 8 4.4142 -1.4840 0.7760 10 8 2.0063 -0.6736 -1.1669 11 6 2.2000 0.1830 -2.2941 12 6 2.7089 -0.6404 -3.4790 13 6 2.9158 0.2766 -4.6861 14 6 3.4176 -0.5343 -5.8528 15 1 3.5738 -1.5975 -5.7442 16 6 3.6783 0.0811 -7.0589 17 7 4.1158 -0.6267 -8.0772 18 14 3.4089 1.9200 -7.2466 19 1 4.6571 2.6419 -6.8913 20 1 3.0434 2.2258 -8.6530 21 1 2.3122 2.3542 -6.3445 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7716 1.2054 26 1 1.6055 -0.2619 2.1369 27 1 3.8258 1.2158 2.4416 28 1 6.4439 0.6495 2.0945 29 1 6.5717 -1.5764 0.7178 30 1 1.2538 0.6548 -2.5589 31 1 2.9319 0.9515 -2.0451 32 1 3.6553 -1.1119 -3.2140 33 1 1.9773 -1.4090 -3.7282 34 1 1.9692 0.7477 -4.9509 35 1 3.6471 1.0455 -4.4371 36 1 4.2989 -0.1938 -8.9258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:25 Heat of formation + Delta-G solvation = -53.941311 kcal Electronic energy + Delta-G solvation = -16629.302075 eV Core-core repulsion = 13886.760474 eV Total energy + Delta-G solvation = -2742.541602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.46941 -38.29182 -34.54493 -33.28431 -32.67068 -31.44766 -29.94154 -27.10624 -26.23524 -22.76889 -21.76460 -21.55206 -20.42509 -19.94503 -17.35988 -16.90440 -16.43048 -15.94821 -15.34203 -14.97287 -14.25974 -13.98705 -13.54504 -13.13372 -12.85630 -12.77544 -12.67539 -12.56102 -12.20351 -12.05760 -11.62802 -11.53713 -11.08779 -10.84238 -10.52697 -10.02713 -9.87161 -9.81853 -9.65161 -9.26413 -9.17046 -8.52331 -8.38151 -6.02462 -4.00372 1.80367 2.64058 3.08443 3.31369 3.38427 3.41972 3.88072 4.46358 4.59204 4.86105 5.01140 5.02542 5.12580 5.21750 5.31106 5.33007 5.54970 5.59931 5.63945 5.68287 5.82697 5.89390 5.94694 6.06232 6.13711 6.19439 6.52520 6.56609 6.57823 6.91181 7.22295 7.30556 7.43821 7.55405 7.81464 8.56795 9.03198 9.59629 11.11104 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.005136 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.418035 B = 5450.789443 C = 5987.979128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.061 0.939 4 C -0.040 4.040 5 C 0.003 3.997 6 C -0.222 4.222 7 C -0.219 4.219 8 C -0.041 4.041 9 O -0.163 6.163 10 O -0.377 6.377 11 C 0.062 3.938 12 C -0.099 4.099 13 C -0.011 4.011 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.266 1.266 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.200 0.800 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.011 0.989 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 2.941 21.606 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.027 3.973 3 H 0.079 0.921 4 C -0.077 4.077 5 C -0.047 4.047 6 C -0.241 4.241 7 C -0.238 4.238 8 C -0.109 4.109 9 O -0.058 6.058 10 O -0.297 6.297 11 C -0.014 4.014 12 C -0.137 4.137 13 C -0.048 4.048 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.191 1.191 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.217 0.783 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.175 2.495 21.243 21.623 hybrid contribution 0.137 1.505 -0.187 1.522 sum -3.038 4.000 21.056 21.647 Atomic orbital electron populations 1.22284 0.95559 1.03045 1.02274 1.22032 0.93439 0.95843 0.85950 0.92093 1.20329 0.85630 1.03717 0.98042 1.22280 0.92416 0.91174 0.98872 1.21528 0.93424 1.01702 1.07476 1.21769 0.97365 0.99164 1.05479 1.24053 0.86042 0.98112 1.02648 1.84094 1.15428 1.45500 1.60751 1.87981 1.86316 1.35589 1.19801 1.22801 0.98723 0.93424 0.86433 1.21434 1.00917 0.98844 0.92467 1.19515 0.96392 0.95495 0.93416 1.21117 1.43759 0.96611 0.94186 0.90891 1.25027 0.94603 0.98073 0.95791 1.69915 1.45943 1.35965 1.02455 0.86777 0.79084 0.86175 0.77247 1.20290 1.21326 1.19067 0.91815 0.91910 0.91544 0.89146 0.87826 0.83859 0.83754 0.78289 0.93946 0.94097 0.92070 0.92002 0.96579 0.97061 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.53 37.16 0.35 -1.42 16 2 C 0.09 1.07 2.71 -26.73 -0.07 0.99 16 3 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 4 C -0.04 -0.43 5.46 -27.88 -0.15 -0.58 16 5 C 0.00 0.04 6.34 -35.62 -0.23 -0.18 16 6 C -0.22 -2.68 10.81 -39.70 -0.43 -3.11 16 7 C -0.22 -2.58 10.91 -39.70 -0.43 -3.01 16 8 C -0.04 -0.50 12.09 29.42 0.36 -0.15 16 9 O -0.16 -2.44 10.65 5.70 0.06 -2.38 16 10 O -0.38 -6.35 9.74 -35.23 -0.34 -6.69 16 11 C 0.06 1.11 5.75 37.16 0.21 1.33 16 12 C -0.10 -2.13 5.52 -26.73 -0.15 -2.27 16 13 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 14 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 15 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 18 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.68 7.87 -51.93 -0.41 0.28 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.20 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.04 0.71 7.87 -51.93 -0.41 0.30 16 31 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -33.20 306.57 -6.44 -39.64 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.80 Total: -2.44 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.08 Total: -22.52 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.77 Total: -27.63 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.28 Total: -9.07 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.20 -6.44 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.299 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds