Wall clock time and date at job start Sun Mar 29 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47257 * 2 1 4 4 C 1.52997 * 109.47204 * 120.00726 * 2 1 3 5 5 C 1.50708 * 109.47127 * 185.00138 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 O 1.42904 * 109.46611 * 240.00267 * 2 1 3 11 11 C 1.42899 * 114.00034 * 90.00454 * 10 2 1 12 12 C 1.52996 * 109.47357 * 179.97438 * 11 10 2 13 13 C 1.53001 * 109.47448 * 179.97438 * 12 11 10 14 14 C 1.50688 * 109.47203 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00361 * 359.97438 * 14 13 12 16 16 C 1.37887 * 120.00013 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99928 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99899 * 359.97438 * 16 14 13 19 19 H 1.48509 * 109.46678 * 90.00268 * 18 16 14 20 20 H 1.48494 * 109.47538 * 210.00260 * 18 16 14 21 21 H 1.48493 * 109.47295 * 330.00757 * 18 16 14 22 22 H 1.08998 * 109.46926 * 299.99559 * 1 2 3 23 23 H 1.08998 * 109.47050 * 59.99705 * 1 2 3 24 24 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47369 * 64.99590 * 4 2 1 26 26 H 1.09005 * 109.46999 * 304.99406 * 4 2 1 27 27 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 28 28 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 29 29 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47061 * 299.99557 * 11 10 2 31 31 H 1.09001 * 109.47663 * 59.98843 * 11 10 2 32 32 H 1.08998 * 109.47137 * 299.99501 * 12 11 10 33 33 H 1.09000 * 109.47093 * 59.99817 * 12 11 10 34 34 H 1.08998 * 109.46796 * 300.00018 * 13 12 11 35 35 H 1.08999 * 109.46849 * 59.99202 * 13 12 11 36 36 H 0.97003 * 119.99929 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3126 6 6 4.2363 0.3657 1.9170 7 6 5.6068 0.0704 1.7334 8 6 5.6678 -1.0735 1.0283 9 8 4.4142 -1.4840 0.7760 10 8 2.0063 -0.6736 -1.1669 11 6 2.2000 0.1830 -2.2941 12 6 2.7089 -0.6404 -3.4790 13 6 2.9158 0.2766 -4.6861 14 6 3.4176 -0.5343 -5.8528 15 1 3.5738 -1.5975 -5.7442 16 6 3.6783 0.0811 -7.0589 17 7 4.1158 -0.6267 -8.0772 18 14 3.4089 1.9200 -7.2466 19 1 4.6571 2.6419 -6.8913 20 1 3.0434 2.2258 -8.6530 21 1 2.3122 2.3542 -6.3445 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7716 1.2054 26 1 1.6055 -0.2619 2.1369 27 1 3.8258 1.2158 2.4416 28 1 6.4439 0.6495 2.0945 29 1 6.5717 -1.5764 0.7178 30 1 1.2538 0.6548 -2.5589 31 1 2.9319 0.9515 -2.0451 32 1 3.6553 -1.1119 -3.2140 33 1 1.9773 -1.4090 -3.7282 34 1 1.9692 0.7477 -4.9509 35 1 3.6471 1.0455 -4.4371 36 1 4.2989 -0.1938 -8.9258 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:25 Heat of formation + Delta-G solvation = -74.553067 kcal Electronic energy + Delta-G solvation = -16630.195868 eV Core-core repulsion = 13886.760474 eV Total energy + Delta-G solvation = -2743.435394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.40631 -39.46412 -36.19313 -34.73649 -33.81669 -33.19808 -30.85287 -28.93927 -27.12517 -24.59063 -22.70891 -22.51744 -21.96013 -21.16706 -18.99876 -18.25489 -17.73445 -17.00402 -16.67748 -16.27018 -15.95569 -15.25070 -14.88145 -14.75403 -14.00487 -13.97655 -13.69037 -13.65625 -13.51912 -13.22246 -12.88950 -12.76571 -12.55657 -12.40211 -11.85802 -11.73988 -11.66719 -11.57069 -11.33139 -10.80450 -10.78759 -10.49788 -9.29817 -8.31320 -6.36805 0.86996 1.35179 1.37597 1.49817 1.75018 2.24013 2.35274 2.73833 3.03474 3.74507 3.96276 4.11547 4.14104 4.19965 4.27211 4.30139 4.36483 4.53435 4.54991 4.67399 4.80161 4.84491 4.92431 4.94522 4.98401 5.06491 5.08612 5.29494 5.35870 5.42473 5.52055 5.61597 5.69170 6.24248 6.29406 6.39693 6.71006 7.27600 8.85908 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.005136 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.418035 B = 5450.789443 C = 5987.979128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 H 0.067 0.933 4 C -0.037 4.037 5 C -0.021 4.021 6 C -0.224 4.224 7 C -0.225 4.225 8 C -0.061 4.061 9 O -0.196 6.196 10 O -0.401 6.401 11 C 0.075 3.925 12 C -0.093 4.093 13 C -0.006 4.006 14 C -0.538 4.538 15 H 0.027 0.973 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.243 1.243 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.168 0.832 28 H 0.167 0.833 29 H 0.222 0.778 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 5.614 23.442 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.085 0.915 4 C -0.073 4.073 5 C -0.071 4.071 6 C -0.243 4.243 7 C -0.244 4.244 8 C -0.128 4.128 9 O -0.093 6.093 10 O -0.322 6.322 11 C -0.001 4.001 12 C -0.131 4.131 13 C -0.043 4.043 14 C -0.576 4.576 15 H 0.045 0.955 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.166 1.166 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.160 0.840 27 H 0.186 0.814 28 H 0.184 0.816 29 H 0.238 0.762 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.172 5.162 23.111 24.045 hybrid contribution 0.493 0.554 -0.715 1.030 sum -3.679 5.715 22.396 23.405 Atomic orbital electron populations 1.22257 0.93681 1.03229 1.03487 1.22356 0.94898 0.96003 0.84696 0.91508 1.20486 0.84462 1.03688 0.98700 1.22844 0.93398 0.91487 0.99392 1.21914 0.93473 1.01976 1.06958 1.22161 0.98228 0.99046 1.04984 1.24669 0.86104 0.98917 1.03080 1.84073 1.16620 1.46821 1.61741 1.87941 1.86951 1.36476 1.20785 1.22478 0.99412 0.92518 0.85677 1.21247 0.99950 0.98529 0.93387 1.19423 0.96674 0.95484 0.92714 1.21456 1.44339 0.95288 0.96539 0.95460 1.26081 0.93964 1.04219 0.95084 1.70076 1.47202 1.38677 1.03302 0.85589 0.80103 0.78643 0.77916 1.19020 1.20662 1.16594 0.88617 0.92662 0.91903 0.89704 0.84020 0.81436 0.81568 0.76184 0.92309 0.93543 0.93917 0.93139 0.95424 0.96026 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.53 71.98 0.69 -2.29 16 2 C 0.08 1.76 2.71 30.59 0.08 1.84 16 3 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 4 C -0.04 -0.71 5.46 29.85 0.16 -0.55 16 5 C -0.02 -0.53 6.34 24.83 0.16 -0.38 16 6 C -0.22 -4.93 10.81 22.19 0.24 -4.69 16 7 C -0.23 -4.97 10.91 22.19 0.24 -4.72 16 8 C -0.06 -1.48 12.09 66.97 0.81 -0.67 16 9 O -0.20 -5.91 10.65 -2.51 -0.03 -5.93 16 10 O -0.40 -13.13 9.74 -148.98 -1.45 -14.58 16 11 C 0.08 2.59 5.75 71.98 0.41 3.00 16 12 C -0.09 -4.05 5.52 30.59 0.17 -3.88 16 13 C -0.01 -0.27 4.04 29.84 0.12 -0.15 16 14 C -0.54 -32.52 9.66 25.60 0.25 -32.28 16 15 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 16 C 0.00 0.19 5.47 84.66 0.46 0.65 16 17 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 18 Si 0.96 44.72 27.47 68.60 1.88 46.61 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 22 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.06 7.87 -2.39 -0.02 1.04 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 26 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.22 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.06 1.82 7.87 -2.39 -0.02 1.80 16 31 H 0.05 1.53 8.08 -2.39 -0.02 1.52 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 35 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -73.57 306.57 5.47 -68.09 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 3.79 Total: -44.10 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.48 Total: -20.51 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -73.57 5.47 -68.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.459 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds