Wall clock time and date at job start Sun Mar 29 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47486 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47486 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.47264 * 180.02562 * 13 12 11 15 15 C 1.42901 * 114.00134 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.20246 * 329.56496 * 15 14 13 17 17 C 1.50817 * 110.22578 * 91.45483 * 15 14 13 18 18 C 1.32523 * 110.51899 * 119.02118 * 17 15 14 19 19 C 1.45873 * 112.27802 * 0.02562 * 18 17 15 20 20 O 1.21330 * 126.24624 * 180.02562 * 19 18 17 21 21 C 1.51378 * 107.51371 * 359.97438 * 19 18 17 22 22 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.09004 * 109.47371 * 300.00515 * 9 7 2 25 25 H 1.09001 * 109.46997 * 60.00596 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00218 * 11 10 9 28 28 H 1.09004 * 109.47086 * 300.00416 * 11 10 9 29 29 H 1.09001 * 109.46997 * 60.00430 * 12 11 10 30 30 H 1.08992 * 109.47534 * 300.00484 * 12 11 10 31 31 H 1.09001 * 109.47289 * 60.00050 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00306 * 13 12 11 33 33 H 1.07997 * 124.74167 * 299.04996 * 17 15 14 34 34 H 1.08001 * 123.86552 * 180.02562 * 18 17 15 35 35 H 1.09002 * 110.50284 * 241.34102 * 21 19 18 36 36 H 1.09006 * 110.49235 * 118.66790 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7095 -7.4750 -0.0018 14 8 2.6381 -8.5612 -0.0006 15 6 2.0235 -9.8513 -0.0011 16 1 1.0648 -9.8118 0.5160 17 6 1.8333 -10.3377 -1.4160 18 6 2.5062 -11.4619 -1.6151 19 6 3.2248 -11.8951 -0.4219 20 8 3.9180 -12.8858 -0.3220 21 6 2.9490 -10.8822 0.6688 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8540 -5.0445 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 3.1005 -6.0923 0.8900 30 1 3.1019 -6.0922 -0.8899 31 1 1.0838 -7.5324 -0.8925 32 1 1.0818 -7.5330 0.8875 33 1 1.2330 -9.8393 -2.1626 34 1 2.5209 -11.9963 -2.5535 35 1 3.8757 -10.4092 0.9938 36 1 2.4455 -11.3563 1.5114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224376893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:03 Heat of formation + Delta-G solvation = -90.134190 kcal Electronic energy + Delta-G solvation = -15714.510680 eV Core-core repulsion = 12970.399637 eV Total energy + Delta-G solvation = -2744.111043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44628 -38.39905 -36.10199 -34.90978 -32.82100 -30.49993 -29.44661 -26.70765 -25.85997 -23.47227 -21.26847 -20.89606 -20.07098 -19.55023 -17.28619 -17.03687 -16.18430 -15.88531 -15.07191 -14.93311 -14.57891 -14.44238 -14.11973 -13.53146 -12.97606 -12.77432 -12.48880 -12.34332 -11.93973 -11.76738 -11.48164 -11.20268 -10.94742 -10.52356 -10.50469 -10.42592 -10.14079 -10.02779 -9.78248 -9.65389 -9.27127 -9.03119 -8.33779 -5.99246 -4.01451 0.57342 2.42235 3.33657 3.37784 3.40144 3.42407 3.72051 4.01288 4.39772 4.46757 4.54379 4.82528 5.03524 5.11793 5.15107 5.18291 5.36373 5.39432 5.54735 5.64227 5.66165 5.66401 5.83189 6.01418 6.22825 6.36708 6.46111 6.78554 6.91693 6.94601 7.13905 7.16189 7.68805 7.84232 8.01476 8.44676 9.05874 9.62552 11.12134 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.081405 B = 0.002825 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.877401 B = 9907.392017 C =10017.962319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.058 3.942 14 O -0.370 6.370 15 C 0.099 3.901 16 H 0.090 0.910 17 C -0.089 4.089 18 C -0.234 4.234 19 C 0.390 3.610 20 O -0.447 6.447 21 C -0.180 4.180 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.121 0.879 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -20.818 -0.720 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.153 4.153 12 C -0.155 4.155 13 C -0.018 4.018 14 O -0.289 6.289 15 C 0.040 3.960 16 H 0.108 0.892 17 C -0.108 4.108 18 C -0.253 4.253 19 C 0.269 3.731 20 O -0.323 6.323 21 C -0.217 4.217 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.139 0.861 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.794 -21.181 -0.651 21.267 hybrid contribution -0.005 1.064 -0.172 1.078 sum 1.789 -20.117 -0.823 20.213 Atomic orbital electron populations 1.69956 1.06061 1.26663 1.50993 1.25034 0.94857 0.99255 0.95383 0.86662 0.79587 0.83142 0.78629 1.20244 1.21302 1.20245 1.21260 0.93028 0.91215 1.50431 0.92773 1.19104 0.94054 0.91446 0.97089 1.21617 0.99067 0.93727 1.00342 1.21593 0.97706 0.94424 1.01620 1.21611 0.99110 0.91634 1.03142 1.22801 0.92102 0.86589 1.00334 1.88048 1.33506 1.12544 1.94794 1.21628 0.96912 0.84791 0.92621 0.89247 1.24749 0.93591 0.94222 0.98221 1.23535 1.01080 0.99969 1.00731 1.22762 0.77007 0.84053 0.89315 1.90576 1.31922 1.25525 1.84249 1.22653 1.03239 0.96452 0.99347 0.92984 0.96707 0.96709 0.93379 0.93396 0.92384 0.92369 0.91321 0.91363 0.93063 0.92922 0.83430 0.83956 0.86091 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.12 -1.83 5.21 -26.73 -0.14 -1.97 16 12 C -0.12 -1.54 5.58 -26.73 -0.15 -1.69 16 13 C 0.06 0.61 5.78 37.16 0.21 0.83 16 14 O -0.37 -3.97 9.95 -35.23 -0.35 -4.32 16 15 C 0.10 0.77 3.44 -27.37 -0.09 0.68 16 16 H 0.09 0.54 7.84 -51.93 -0.41 0.13 16 17 C -0.09 -0.63 10.58 -36.16 -0.38 -1.01 16 18 C -0.23 -1.86 10.62 -38.44 -0.41 -2.26 16 19 C 0.39 3.81 7.77 -30.92 -0.24 3.57 16 20 O -0.45 -5.89 18.03 5.51 0.10 -5.79 16 21 C -0.18 -1.38 6.78 -27.09 -0.18 -1.56 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 0.99 7.98 -51.93 -0.41 0.57 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -32.19 310.09 -7.79 -39.98 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -5.86 Total: -5.84 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.07 Total: -19.08 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.25 Total: -10.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.19 -7.79 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224376893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.153 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds