Wall clock time and date at job start Sun Mar 29 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47486 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47486 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.47264 * 180.02562 * 13 12 11 15 15 C 1.42901 * 114.00134 * 179.97438 * 14 13 12 16 16 H 1.09000 * 110.20246 * 329.56496 * 15 14 13 17 17 C 1.50817 * 110.22578 * 91.45483 * 15 14 13 18 18 C 1.32523 * 110.51899 * 119.02118 * 17 15 14 19 19 C 1.45873 * 112.27802 * 0.02562 * 18 17 15 20 20 O 1.21330 * 126.24624 * 180.02562 * 19 18 17 21 21 C 1.51378 * 107.51371 * 359.97438 * 19 18 17 22 22 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.09004 * 109.47371 * 300.00515 * 9 7 2 25 25 H 1.09001 * 109.46997 * 60.00596 * 10 9 7 26 26 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 27 27 H 1.09001 * 109.46652 * 60.00218 * 11 10 9 28 28 H 1.09004 * 109.47086 * 300.00416 * 11 10 9 29 29 H 1.09001 * 109.46997 * 60.00430 * 12 11 10 30 30 H 1.08992 * 109.47534 * 300.00484 * 12 11 10 31 31 H 1.09001 * 109.47289 * 60.00050 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00306 * 13 12 11 33 33 H 1.07997 * 124.74167 * 299.04996 * 17 15 14 34 34 H 1.08001 * 123.86552 * 180.02562 * 18 17 15 35 35 H 1.09002 * 110.50284 * 241.34102 * 21 19 18 36 36 H 1.09006 * 110.49235 * 118.66790 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7095 -7.4750 -0.0018 14 8 2.6381 -8.5612 -0.0006 15 6 2.0235 -9.8513 -0.0011 16 1 1.0648 -9.8118 0.5160 17 6 1.8333 -10.3377 -1.4160 18 6 2.5062 -11.4619 -1.6151 19 6 3.2248 -11.8951 -0.4219 20 8 3.9180 -12.8858 -0.3220 21 6 2.9490 -10.8822 0.6688 22 1 -0.4849 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8895 26 1 2.8720 -3.6043 -0.8905 27 1 0.8540 -5.0445 -0.8914 28 1 0.8533 -5.0451 0.8886 29 1 3.1005 -6.0923 0.8900 30 1 3.1019 -6.0922 -0.8899 31 1 1.0838 -7.5324 -0.8925 32 1 1.0818 -7.5330 0.8875 33 1 1.2330 -9.8393 -2.1626 34 1 2.5209 -11.9963 -2.5535 35 1 3.8757 -10.4092 0.9938 36 1 2.4455 -11.3563 1.5114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224376893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:03 Heat of formation + Delta-G solvation = -109.067889 kcal Electronic energy + Delta-G solvation = -15715.331707 eV Core-core repulsion = 12970.399637 eV Total energy + Delta-G solvation = -2744.932069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14844 -39.20267 -37.19645 -36.14396 -34.68479 -32.02364 -30.16925 -28.17852 -26.72339 -25.06125 -22.41972 -21.87019 -21.49417 -20.21744 -18.44406 -17.94304 -17.70925 -16.85147 -16.52638 -15.86526 -15.74762 -15.63421 -15.02867 -14.52551 -14.28432 -14.04122 -13.75635 -13.51599 -13.08890 -12.98526 -12.78993 -12.63460 -12.39404 -12.30423 -11.88820 -11.83010 -11.31083 -11.29263 -11.00079 -10.85455 -10.65314 -10.53803 -10.49808 -8.19322 -6.30294 -0.07803 1.40286 1.43185 1.51158 1.75444 2.41528 2.68974 3.11075 3.13488 3.41093 3.76118 3.96999 4.08349 4.19102 4.29815 4.35420 4.47663 4.52389 4.61685 4.67658 4.78325 4.92762 4.98103 5.00926 5.07847 5.13649 5.27552 5.33199 5.35739 5.43529 5.58108 5.81284 5.89200 6.20505 6.28169 6.42866 6.87335 7.38937 8.92205 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.081405 B = 0.002825 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.877401 B = 9907.392017 C =10017.962319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.022 3.978 10 C -0.101 4.101 11 C -0.107 4.107 12 C -0.111 4.111 13 C 0.061 3.939 14 O -0.387 6.387 15 C 0.093 3.907 16 H 0.116 0.884 17 C -0.071 4.071 18 C -0.250 4.250 19 C 0.386 3.614 20 O -0.493 6.493 21 C -0.177 4.177 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.443 -20.762 -0.787 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.016 4.016 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.149 4.149 13 C -0.015 4.015 14 O -0.307 6.307 15 C 0.035 3.965 16 H 0.134 0.866 17 C -0.090 4.090 18 C -0.269 4.269 19 C 0.267 3.733 20 O -0.373 6.373 21 C -0.214 4.214 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.188 0.812 34 H 0.169 0.831 35 H 0.133 0.867 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.853 -21.126 -0.719 21.219 hybrid contribution -0.064 1.065 -0.147 1.077 sum 1.790 -20.061 -0.866 20.159 Atomic orbital electron populations 1.70084 1.07749 1.27818 1.51751 1.25987 0.95802 1.03352 0.94776 0.85525 0.78317 0.78178 0.79184 1.19198 1.20749 1.19212 1.21744 0.93545 0.92721 1.50476 0.92398 1.19043 0.94553 0.93175 0.94782 1.21459 0.98029 0.94043 1.00351 1.21433 0.97874 0.93173 1.01953 1.21442 0.98413 0.92144 1.02861 1.22692 0.91684 0.85311 1.01769 1.88013 1.34212 1.13459 1.95000 1.21842 0.97809 0.83434 0.93367 0.86643 1.24975 0.92483 0.93354 0.98161 1.23572 1.01787 1.00923 1.00630 1.23244 0.75911 0.83486 0.90614 1.90557 1.34112 1.27493 1.85089 1.22682 1.03337 0.95940 0.99436 0.92758 0.98976 0.99007 0.93340 0.93334 0.92039 0.92105 0.91651 0.91688 0.91544 0.91616 0.81188 0.83118 0.86675 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C -0.11 -3.23 5.21 30.59 0.16 -3.07 16 12 C -0.11 -2.67 5.58 30.59 0.17 -2.50 16 13 C 0.06 1.11 5.78 71.98 0.42 1.53 16 14 O -0.39 -7.25 9.95 -148.98 -1.48 -8.73 16 15 C 0.09 1.18 3.44 30.18 0.10 1.29 16 16 H 0.12 0.93 7.84 -2.39 -0.02 0.91 16 17 C -0.07 -0.81 10.58 24.58 0.26 -0.55 16 18 C -0.25 -3.60 10.62 23.10 0.25 -3.35 16 19 C 0.39 7.31 7.77 27.88 0.22 7.53 16 20 O -0.49 -13.27 18.03 -3.19 -0.06 -13.33 16 21 C -0.18 -2.42 6.78 30.36 0.21 -2.22 16 22 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 23 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.03 8.10 -2.38 -0.02 1.01 16 33 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.12 1.76 7.98 -2.39 -0.02 1.74 16 36 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -69.90 310.09 4.58 -65.32 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.03 Total: 1.81 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 2.78 Total: -34.77 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.28 Total: -56.63 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.54 Total: -22.06 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.90 4.58 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224376893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.744 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds