Wall clock time and date at job start Sun Mar 29 2020 21:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38551 * 120.77162 * 2 1 4 4 C 1.38522 * 119.13848 * 179.73148 * 3 2 1 5 5 F 1.35101 * 119.65003 * 180.27400 * 4 3 2 6 6 N 1.32058 * 120.69883 * 0.55680 * 4 3 2 7 7 C 1.31903 * 121.69128 * 359.71365 * 6 4 3 8 8 C 1.38148 * 120.79661 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.39030 * 180.02562 * 8 7 6 10 10 N 1.46892 * 109.47278 * 105.54068 * 9 8 7 11 11 C 1.46899 * 110.99914 * 287.88215 * 10 9 8 12 12 C 1.46899 * 111.00404 * 163.92625 * 10 9 8 13 13 C 1.50704 * 109.47323 * 189.99714 * 12 10 9 14 14 H 1.07999 * 119.99717 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99979 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00211 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47206 * 89.99824 * 17 15 13 19 19 H 1.48502 * 109.47127 * 209.99792 * 17 15 13 20 20 H 1.48495 * 109.46966 * 329.99516 * 17 15 13 21 21 H 1.08993 * 109.47081 * 263.35541 * 1 2 3 22 22 H 1.09007 * 109.47208 * 143.35989 * 1 2 3 23 23 H 1.09000 * 109.47358 * 23.36562 * 1 2 3 24 24 H 1.08003 * 120.43273 * 359.97438 * 3 2 1 25 25 H 1.07995 * 119.60786 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.47168 * 225.54136 * 9 8 7 27 27 H 1.09000 * 109.47178 * 345.53572 * 9 8 7 28 28 H 1.09001 * 109.47311 * 56.62086 * 11 10 9 29 29 H 1.09007 * 109.47475 * 176.62596 * 11 10 9 30 30 H 1.09006 * 109.47278 * 296.61891 * 11 10 9 31 31 H 1.08995 * 109.47250 * 309.99937 * 12 10 9 32 32 H 1.09000 * 109.46961 * 69.99703 * 12 10 9 33 33 H 0.96997 * 120.00245 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.1904 0.0000 4 6 3.6004 1.1510 0.0057 5 9 4.3019 2.3056 0.0113 6 7 4.2420 -0.0033 0.0000 7 6 3.5977 -1.1542 -0.0056 8 6 2.2167 -1.1917 -0.0062 9 6 1.4899 -2.5118 -0.0120 10 7 0.9283 -2.7674 1.3210 11 6 1.9869 -3.1016 2.2830 12 6 -0.0894 -3.8255 1.2695 13 6 -0.8127 -3.8916 2.5900 14 1 -0.5435 -3.2150 3.3875 15 6 -1.8180 -4.8159 2.7798 16 7 -2.1454 -5.6403 1.8087 17 14 -2.7150 -4.8974 4.4163 18 1 -3.8924 -3.9932 4.3810 19 1 -3.1675 -6.2900 4.6640 20 1 -1.7981 -4.4739 5.5049 21 1 -0.3633 -0.1189 1.0207 22 1 -0.3634 -0.8246 -0.6133 23 1 -0.3634 0.9434 -0.4076 24 1 1.6955 2.1369 -0.0004 25 1 4.1563 -2.0784 -0.0106 26 1 0.6844 -2.4798 -0.7457 27 1 2.1865 -3.3089 -0.2719 28 1 2.7217 -2.2970 2.3088 29 1 1.5508 -3.2274 3.2741 30 1 2.4737 -4.0287 1.9801 31 1 -0.8026 -3.6053 0.4752 32 1 0.3918 -4.7831 1.0704 33 1 -2.8529 -6.2903 1.9422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231979033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:35 Heat of formation + Delta-G solvation = -9.651660 kcal Electronic energy + Delta-G solvation = -16614.510368 eV Core-core repulsion = 13782.721756 eV Total energy + Delta-G solvation = -2831.788612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.92789 -40.22790 -36.67264 -33.94553 -32.69654 -31.19072 -28.06868 -27.15025 -26.70277 -24.08182 -22.78190 -21.58458 -20.19209 -17.41396 -17.37302 -16.49599 -16.01601 -15.28380 -14.93053 -14.45146 -14.31103 -14.18092 -13.55435 -13.27772 -13.14999 -12.56443 -12.40721 -12.19033 -11.99695 -11.56893 -11.40289 -11.13544 -10.95836 -10.71756 -10.55279 -9.99633 -9.56979 -9.45079 -9.28364 -8.73006 -8.49211 -7.37717 -6.09142 -4.10731 0.99723 1.22488 3.28087 3.34628 3.37866 3.62766 3.67188 4.37733 4.53554 4.79012 4.85929 4.96701 5.12688 5.27364 5.49248 5.54863 5.73112 5.79046 5.84811 5.97138 6.03920 6.14235 6.25695 6.35498 6.53120 6.68269 6.75305 7.16783 7.24696 7.70558 7.71741 7.97135 8.09000 8.44340 8.96830 9.54028 11.01606 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.042996 B = 0.005271 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.072174 B = 5310.679931 C = 5424.022515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.012 3.988 3 C -0.200 4.200 4 C 0.295 3.705 5 F -0.120 7.120 6 N -0.522 5.522 7 C 0.137 3.863 8 C -0.127 4.127 9 C 0.093 3.907 10 N -0.533 5.533 11 C 0.037 3.963 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.143 0.857 25 H 0.162 0.838 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.014 0.986 31 H 0.031 0.969 32 H -0.008 1.008 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 9.739 -4.567 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.004 3.996 3 C -0.221 4.221 4 C 0.141 3.859 5 F -0.100 7.100 6 N -0.237 5.237 7 C -0.019 4.019 8 C -0.130 4.130 9 C -0.035 4.035 10 N -0.258 5.258 11 C -0.111 4.111 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.114 0.886 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.161 0.839 25 H 0.179 0.821 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.010 0.990 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.501 10.066 -4.446 13.318 hybrid contribution -0.774 -0.643 0.612 1.178 sum 6.727 9.424 -3.834 12.197 Atomic orbital electron populations 1.20837 0.88859 1.02395 1.04764 1.20124 0.97606 0.90884 0.90991 1.21693 0.92478 1.00408 1.07545 1.18093 0.86812 0.81693 0.99292 1.91585 1.80072 1.44763 1.93548 1.66962 1.42283 0.97886 1.16575 1.22392 0.91246 0.94146 0.94152 1.20953 0.94349 0.96798 1.00878 1.20934 0.97527 0.90898 0.94172 1.62128 1.12773 1.46914 1.03945 1.22229 0.93503 0.97120 0.98279 1.19773 0.88654 0.86543 0.98203 1.21129 1.17529 1.17311 0.98661 0.91867 1.24974 0.97080 0.95508 0.96946 1.69950 1.30746 1.20927 1.32161 0.86506 0.79989 0.77139 0.83824 1.20615 1.21320 1.19881 0.88622 0.90209 0.91959 0.83907 0.82099 0.89823 0.94401 0.93912 0.90668 0.96713 0.95112 0.98978 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.50 36.00 0.34 -1.10 16 2 C 0.01 0.17 5.92 -104.34 -0.62 -0.45 16 3 C -0.20 -2.60 9.77 -39.36 -0.38 -2.99 16 4 C 0.29 4.31 8.41 -17.35 -0.15 4.16 16 5 F -0.12 -1.73 17.29 2.25 0.04 -1.69 16 6 N -0.52 -8.08 10.37 -13.59 -0.14 -8.22 16 7 C 0.14 1.94 10.30 -17.55 -0.18 1.76 16 8 C -0.13 -1.85 4.67 -104.48 -0.49 -2.34 16 9 C 0.09 1.50 4.48 -4.98 -0.02 1.48 16 10 N -0.53 -10.48 4.62 -245.83 -1.14 -11.61 16 11 C 0.04 0.69 9.19 60.06 0.55 1.24 16 12 C 0.19 4.67 4.71 -4.97 -0.02 4.65 16 13 C -0.51 -13.54 8.51 -34.44 -0.29 -13.84 16 14 H 0.06 1.68 7.11 -52.49 -0.37 1.31 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 22 H 0.08 1.07 6.65 -51.93 -0.35 0.72 16 23 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 24 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 25 H 0.16 1.93 8.00 -52.49 -0.42 1.51 16 26 H 0.08 1.32 6.54 -51.93 -0.34 0.98 16 27 H 0.04 0.58 7.87 -51.93 -0.41 0.17 16 28 H 0.04 0.71 6.99 -51.93 -0.36 0.35 16 29 H 0.07 1.51 6.84 -51.92 -0.36 1.15 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.78 7.86 -51.93 -0.41 0.38 16 32 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -28.86 284.04 -6.86 -35.71 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.26 Total: -3.46 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.36 Total: -5.98 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.54 Total: -44.83 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.86 -6.86 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231979033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.063 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds