Wall clock time and date at job start Sun Mar 29 2020 21:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38551 * 120.77162 * 2 1 4 4 C 1.38522 * 119.13848 * 179.73148 * 3 2 1 5 5 F 1.35101 * 119.65003 * 180.27400 * 4 3 2 6 6 N 1.32058 * 120.69883 * 0.55680 * 4 3 2 7 7 C 1.31903 * 121.69128 * 359.71365 * 6 4 3 8 8 C 1.38148 * 120.79661 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.39030 * 180.02562 * 8 7 6 10 10 N 1.46892 * 109.47278 * 105.54068 * 9 8 7 11 11 C 1.46899 * 110.99914 * 287.88215 * 10 9 8 12 12 C 1.46899 * 111.00404 * 163.92625 * 10 9 8 13 13 C 1.50704 * 109.47323 * 189.99714 * 12 10 9 14 14 H 1.07999 * 119.99717 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99979 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00211 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47206 * 89.99824 * 17 15 13 19 19 H 1.48502 * 109.47127 * 209.99792 * 17 15 13 20 20 H 1.48495 * 109.46966 * 329.99516 * 17 15 13 21 21 H 1.08993 * 109.47081 * 263.35541 * 1 2 3 22 22 H 1.09007 * 109.47208 * 143.35989 * 1 2 3 23 23 H 1.09000 * 109.47358 * 23.36562 * 1 2 3 24 24 H 1.08003 * 120.43273 * 359.97438 * 3 2 1 25 25 H 1.07995 * 119.60786 * 179.97438 * 7 6 4 26 26 H 1.09006 * 109.47168 * 225.54136 * 9 8 7 27 27 H 1.09000 * 109.47178 * 345.53572 * 9 8 7 28 28 H 1.09001 * 109.47311 * 56.62086 * 11 10 9 29 29 H 1.09007 * 109.47475 * 176.62596 * 11 10 9 30 30 H 1.09006 * 109.47278 * 296.61891 * 11 10 9 31 31 H 1.08995 * 109.47250 * 309.99937 * 12 10 9 32 32 H 1.09000 * 109.46961 * 69.99703 * 12 10 9 33 33 H 0.96997 * 120.00245 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2158 1.1904 0.0000 4 6 3.6004 1.1510 0.0057 5 9 4.3019 2.3056 0.0113 6 7 4.2420 -0.0033 0.0000 7 6 3.5977 -1.1542 -0.0056 8 6 2.2167 -1.1917 -0.0062 9 6 1.4899 -2.5118 -0.0120 10 7 0.9283 -2.7674 1.3210 11 6 1.9869 -3.1016 2.2830 12 6 -0.0894 -3.8255 1.2695 13 6 -0.8127 -3.8916 2.5900 14 1 -0.5435 -3.2150 3.3875 15 6 -1.8180 -4.8159 2.7798 16 7 -2.1454 -5.6403 1.8087 17 14 -2.7150 -4.8974 4.4163 18 1 -3.8924 -3.9932 4.3810 19 1 -3.1675 -6.2900 4.6640 20 1 -1.7981 -4.4739 5.5049 21 1 -0.3633 -0.1189 1.0207 22 1 -0.3634 -0.8246 -0.6133 23 1 -0.3634 0.9434 -0.4076 24 1 1.6955 2.1369 -0.0004 25 1 4.1563 -2.0784 -0.0106 26 1 0.6844 -2.4798 -0.7457 27 1 2.1865 -3.3089 -0.2719 28 1 2.7217 -2.2970 2.3088 29 1 1.5508 -3.2274 3.2741 30 1 2.4737 -4.0287 1.9801 31 1 -0.8026 -3.6053 0.4752 32 1 0.3918 -4.7831 1.0704 33 1 -2.8529 -6.2903 1.9422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231979033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:34 Heat of formation + Delta-G solvation = -27.726318 kcal Electronic energy + Delta-G solvation = -16615.294144 eV Core-core repulsion = 13782.721756 eV Total energy + Delta-G solvation = -2832.572388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.03396 -41.35892 -38.21608 -35.20939 -34.54049 -32.50093 -29.40515 -28.78111 -28.07623 -25.72538 -23.95739 -23.01806 -21.67137 -18.53872 -18.51271 -18.45319 -17.16012 -16.83865 -16.35376 -15.98094 -15.78396 -15.40877 -14.79801 -14.67598 -14.49601 -13.87253 -13.64471 -13.53361 -13.33431 -13.27196 -12.86467 -12.65348 -12.54981 -12.42631 -12.27109 -11.84609 -11.31569 -10.67116 -10.58100 -10.52503 -9.87710 -9.00839 -8.17310 -6.26043 -0.11006 0.12707 1.44135 1.44487 1.55171 2.41490 2.52211 2.58122 3.16209 3.40265 3.49370 3.73917 3.84822 3.91820 4.35540 4.48485 4.52101 4.55974 4.70473 4.73589 4.76494 4.88101 4.94891 5.10018 5.23200 5.29312 5.34356 5.44630 5.66371 5.68706 6.07807 6.31359 6.60820 6.62616 6.90047 7.43581 8.93288 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.042996 B = 0.005271 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.072174 B = 5310.679931 C = 5424.022515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.008 3.992 3 C -0.189 4.189 4 C 0.284 3.716 5 F -0.121 7.121 6 N -0.542 5.542 7 C 0.139 3.861 8 C -0.135 4.135 9 C 0.097 3.903 10 N -0.536 5.536 11 C 0.043 3.957 12 C 0.209 3.791 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.267 1.267 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.172 0.828 25 H 0.180 0.820 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.012 0.988 32 H -0.035 1.035 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 10.919 -4.158 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.001 4.001 3 C -0.209 4.209 4 C 0.131 3.869 5 F -0.100 7.100 6 N -0.257 5.257 7 C -0.017 4.017 8 C -0.137 4.137 9 C -0.031 4.031 10 N -0.260 5.260 11 C -0.106 4.106 12 C 0.083 3.917 13 C -0.557 4.557 14 H 0.079 0.921 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.192 1.192 21 H 0.097 0.903 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.189 0.811 25 H 0.197 0.803 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.031 0.969 32 H -0.017 1.017 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.695 11.269 -4.039 14.231 hybrid contribution -0.771 -0.960 0.434 1.306 sum 6.924 10.310 -3.604 12.931 Atomic orbital electron populations 1.20804 0.88293 1.03702 1.03655 1.20293 0.98070 0.90999 0.90690 1.21893 0.91792 1.01264 1.05996 1.18332 0.87493 0.81572 0.99506 1.91584 1.80175 1.44694 1.93556 1.66976 1.42949 0.98449 1.17356 1.22627 0.91122 0.94535 0.93423 1.20813 0.94586 0.96169 1.02167 1.20900 0.97814 0.92229 0.92151 1.62002 1.13006 1.44753 1.06222 1.22172 0.93336 0.98137 0.96943 1.19412 0.89207 0.86542 0.96574 1.21443 1.17711 1.17077 0.99508 0.92065 1.25800 0.97963 0.95180 1.00337 1.70066 1.31462 1.21686 1.34162 0.85480 0.78841 0.77153 0.79720 1.19911 1.21099 1.19158 0.90350 0.91126 0.89026 0.81065 0.80299 0.89870 0.93397 0.91655 0.92553 0.96466 0.96943 1.01709 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 9.50 71.23 0.68 -1.93 16 2 C 0.01 0.19 5.92 -19.68 -0.12 0.08 16 3 C -0.19 -4.41 9.77 22.41 0.22 -4.19 16 4 C 0.28 7.72 8.41 84.73 0.71 8.43 16 5 F -0.12 -3.23 17.29 44.97 0.78 -2.46 16 6 N -0.54 -15.78 10.37 -196.92 -2.04 -17.83 16 7 C 0.14 3.68 10.30 84.66 0.87 4.55 16 8 C -0.13 -3.71 4.67 -19.77 -0.09 -3.81 16 9 C 0.10 3.05 4.48 85.56 0.38 3.43 16 10 N -0.54 -20.89 4.62 -931.66 -4.31 -25.19 16 11 C 0.04 1.54 9.19 127.69 1.17 2.72 16 12 C 0.21 10.28 4.71 85.56 0.40 10.68 16 13 C -0.52 -27.87 8.51 25.60 0.22 -27.66 16 14 H 0.06 3.25 7.11 -2.91 -0.02 3.23 16 15 C 0.01 0.29 5.46 84.65 0.46 0.75 16 16 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 17 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.07 1.83 6.65 -2.38 -0.02 1.81 16 23 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 24 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 25 H 0.18 3.91 8.00 -2.91 -0.02 3.89 16 26 H 0.08 2.61 6.54 -2.38 -0.02 2.59 16 27 H 0.05 1.41 7.87 -2.39 -0.02 1.39 16 28 H 0.06 2.06 6.99 -2.39 -0.02 2.04 16 29 H 0.06 2.24 6.84 -2.38 -0.02 2.22 16 30 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.01 0.65 7.86 -2.39 -0.02 0.64 16 32 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -60.89 284.04 2.76 -58.14 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.10 Total: 3.14 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.91 Total: -6.94 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -6.06 Total: -96.80 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -60.89 2.76 -58.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231979033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.409 kcal (2) G-P(sol) polarization free energy of solvation -60.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds