Wall clock time and date at job start Sun Mar 29 2020 22:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46902 * 2 1 4 4 C 1.46897 * 111.00042 * 164.07878 * 3 2 1 5 5 C 1.50704 * 109.47165 * 293.95738 * 4 3 2 6 6 H 1.08005 * 119.99823 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46788 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47479 * 119.99811 * 9 7 5 12 12 H 1.48504 * 109.46980 * 240.00153 * 9 7 5 13 13 C 1.46898 * 111.00234 * 288.03311 * 3 2 1 14 14 C 1.50702 * 109.47386 * 160.04056 * 13 3 2 15 15 C 1.38113 * 119.60296 * 95.02449 * 14 13 3 16 16 C 1.38922 * 119.13103 * 179.77596 * 15 14 13 17 17 F 1.35092 * 120.81642 * 180.25933 * 16 15 14 18 18 C 1.38961 * 118.36236 * 0.49503 * 16 15 14 19 19 C 1.38068 * 119.12875 * 359.75003 * 18 16 15 20 20 N 1.31895 * 119.60675 * 275.30333 * 14 13 3 21 21 H 1.09005 * 109.47251 * 59.12443 * 1 2 3 22 22 H 1.09003 * 109.47040 * 179.11334 * 1 2 3 23 23 H 1.08999 * 109.47817 * 299.12061 * 1 2 3 24 24 H 1.09003 * 109.47192 * 240.00272 * 2 1 3 25 25 H 1.08995 * 109.47177 * 120.00415 * 2 1 3 26 26 H 1.09003 * 109.47478 * 173.95732 * 4 3 2 27 27 H 1.09009 * 109.47175 * 53.95485 * 4 3 2 28 28 H 0.96998 * 119.99666 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47427 * 280.04431 * 13 3 2 30 30 H 1.09002 * 109.47246 * 40.04115 * 13 3 2 31 31 H 1.08004 * 120.43467 * 0.02562 * 15 14 13 32 32 H 1.08000 * 120.43377 * 179.76962 * 18 16 15 33 33 H 1.08001 * 119.60125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4384 1.4418 0.3762 5 6 3.5958 1.0058 1.8102 6 1 2.7284 0.7160 2.3848 7 6 4.8468 0.9780 2.3890 8 7 5.9030 1.3314 1.6895 9 14 5.0420 0.4369 4.1662 10 1 3.7110 0.0926 4.7278 11 1 5.9282 -0.7530 4.2270 12 1 5.6416 1.5417 4.9570 13 6 1.7948 2.0229 -1.3040 14 6 1.8384 3.5208 -1.1447 15 6 3.0177 4.1984 -1.3845 16 6 3.0456 5.5797 -1.2393 17 9 4.1793 6.2771 -1.4701 18 6 1.8799 6.2258 -0.8459 19 6 0.7410 5.4787 -0.6196 20 7 0.7512 4.1684 -0.7727 21 1 -0.3634 0.5274 -0.8821 22 1 -0.3633 -1.0276 -0.0159 23 1 -0.3635 0.5001 0.8977 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8034 2.4628 0.2648 27 1 4.0126 0.7781 -0.2704 28 1 6.7832 1.3114 2.0966 29 1 2.5718 1.7088 -2.0009 30 1 0.8194 1.7268 -1.6900 31 1 3.9056 3.6619 -1.6849 32 1 1.8649 7.2982 -0.7191 33 1 -0.1693 5.9731 -0.3140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232493775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:22 Heat of formation + Delta-G solvation = -9.733519 kcal Electronic energy + Delta-G solvation = -16767.118583 eV Core-core repulsion = 13935.326422 eV Total energy + Delta-G solvation = -2831.792162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.84534 -39.86650 -36.86537 -32.72405 -31.96599 -31.64711 -29.73164 -27.52308 -25.03685 -23.44697 -22.36846 -21.94026 -19.84428 -17.32193 -16.98668 -16.40251 -15.68711 -15.59876 -14.93717 -14.52555 -14.41866 -14.12268 -13.69104 -13.46609 -12.98566 -12.67574 -12.30502 -12.03066 -11.64761 -11.28806 -11.09595 -10.95170 -10.68800 -10.49935 -10.15670 -9.85807 -9.36817 -9.29625 -9.14075 -8.86181 -8.44957 -7.28757 -6.04378 -4.04968 1.22103 1.31951 3.30173 3.37784 3.42815 3.85372 4.19969 4.42651 4.51019 4.79501 5.04443 5.14574 5.27847 5.32060 5.60214 5.73673 5.83526 5.87807 6.01658 6.04775 6.06758 6.13250 6.26519 6.41716 6.73111 6.81713 6.85540 7.25459 7.29934 7.78646 8.05536 8.16351 8.24055 8.51369 9.02733 9.59084 11.06593 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.008282 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.800412 B = 3380.144356 C = 4337.200963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.528 5.528 4 C 0.187 3.813 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.097 3.903 14 C 0.187 3.813 15 C -0.191 4.191 16 C 0.141 3.859 17 F -0.132 7.132 18 C -0.221 4.221 19 C 0.125 3.875 20 N -0.474 5.474 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.019 0.981 25 H 0.088 0.912 26 H 0.033 0.967 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 5.478 -6.942 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.253 5.253 4 C 0.062 3.938 5 C -0.544 4.544 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.032 4.032 14 C 0.049 3.951 15 C -0.212 4.212 16 C 0.114 3.886 17 F -0.110 7.110 18 C -0.242 4.242 19 C -0.032 4.032 20 N -0.185 5.185 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.106 0.894 26 H 0.051 0.949 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.095 5.290 -6.427 12.329 hybrid contribution 1.905 0.096 0.268 1.926 sum -7.190 5.386 -6.160 10.892 Atomic orbital electron populations 1.21808 0.96388 1.00025 1.01959 1.21967 0.94286 0.89570 1.01084 1.62030 1.22978 1.16275 1.24012 1.19855 0.80724 0.97059 0.96121 1.21184 0.92871 1.43830 0.96524 0.91739 1.24983 0.95867 0.95625 0.98143 1.69962 0.98624 1.48612 1.36571 0.86463 0.78152 0.78179 0.84787 1.19610 1.21079 1.21060 1.20967 1.01593 0.87608 0.93047 1.21107 0.87210 0.96731 0.90079 1.22129 1.01270 0.92738 1.05107 1.17956 0.82552 0.90024 0.98048 1.91519 1.48879 1.78893 1.91729 1.22086 0.93363 1.02247 1.06474 1.22618 0.97080 0.89416 0.94134 1.67527 1.29912 1.09177 1.11849 0.93429 0.93454 0.92176 0.96279 0.89392 0.94939 0.99034 0.92995 0.93709 0.89656 0.83598 0.84110 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.99 37.16 0.37 -1.90 16 2 C 0.06 1.12 5.52 -3.83 -0.02 1.10 16 3 N -0.53 -11.32 4.37 -237.52 -1.04 -12.36 16 4 C 0.19 4.81 4.54 -4.98 -0.02 4.78 16 5 C -0.51 -14.17 8.28 -34.44 -0.29 -14.45 16 6 H 0.06 1.81 7.26 -52.48 -0.38 1.43 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.10 1.75 5.15 -4.98 -0.03 1.72 16 14 C 0.19 3.38 5.96 -82.61 -0.49 2.89 16 15 C -0.19 -3.38 8.41 -39.37 -0.33 -3.71 16 16 C 0.14 2.29 7.40 -39.06 -0.29 2.01 16 17 F -0.13 -2.14 17.30 2.25 0.04 -2.11 16 18 C -0.22 -3.03 10.11 -39.38 -0.40 -3.43 16 19 C 0.12 1.75 11.18 -17.57 -0.20 1.56 16 20 N -0.47 -8.18 10.27 -9.51 -0.10 -8.28 16 21 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.02 0.34 8.05 -51.93 -0.42 -0.07 16 25 H 0.09 1.85 6.59 -51.93 -0.34 1.51 16 26 H 0.03 0.89 6.28 -51.93 -0.33 0.56 16 27 H -0.01 -0.22 8.12 -51.92 -0.42 -0.64 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.04 0.78 7.89 -51.93 -0.41 0.37 16 30 H 0.09 1.39 6.23 -51.93 -0.32 1.07 16 31 H 0.15 2.57 7.96 -52.48 -0.42 2.15 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 283.67 15.07 4.27 4.27 Total: -1.00 -30.65 283.67 -7.10 -37.75 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.20 Total: -2.20 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.79 Total: -7.97 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.40 Total: -46.48 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.65 -7.10 -37.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232493775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.015 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds