Wall clock time and date at job start Sun Mar 29 2020 22:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46902 * 2 1 4 4 C 1.46897 * 111.00042 * 164.07878 * 3 2 1 5 5 C 1.50704 * 109.47165 * 293.95738 * 4 3 2 6 6 H 1.08005 * 119.99823 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00191 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46788 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47479 * 119.99811 * 9 7 5 12 12 H 1.48504 * 109.46980 * 240.00153 * 9 7 5 13 13 C 1.46898 * 111.00234 * 288.03311 * 3 2 1 14 14 C 1.50702 * 109.47386 * 160.04056 * 13 3 2 15 15 C 1.38113 * 119.60296 * 95.02449 * 14 13 3 16 16 C 1.38922 * 119.13103 * 179.77596 * 15 14 13 17 17 F 1.35092 * 120.81642 * 180.25933 * 16 15 14 18 18 C 1.38961 * 118.36236 * 0.49503 * 16 15 14 19 19 C 1.38068 * 119.12875 * 359.75003 * 18 16 15 20 20 N 1.31895 * 119.60675 * 275.30333 * 14 13 3 21 21 H 1.09005 * 109.47251 * 59.12443 * 1 2 3 22 22 H 1.09003 * 109.47040 * 179.11334 * 1 2 3 23 23 H 1.08999 * 109.47817 * 299.12061 * 1 2 3 24 24 H 1.09003 * 109.47192 * 240.00272 * 2 1 3 25 25 H 1.08995 * 109.47177 * 120.00415 * 2 1 3 26 26 H 1.09003 * 109.47478 * 173.95732 * 4 3 2 27 27 H 1.09009 * 109.47175 * 53.95485 * 4 3 2 28 28 H 0.96998 * 119.99666 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47427 * 280.04431 * 13 3 2 30 30 H 1.09002 * 109.47246 * 40.04115 * 13 3 2 31 31 H 1.08004 * 120.43467 * 0.02562 * 15 14 13 32 32 H 1.08000 * 120.43377 * 179.76962 * 18 16 15 33 33 H 1.08001 * 119.60125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4384 1.4418 0.3762 5 6 3.5958 1.0058 1.8102 6 1 2.7284 0.7160 2.3848 7 6 4.8468 0.9780 2.3890 8 7 5.9030 1.3314 1.6895 9 14 5.0420 0.4369 4.1662 10 1 3.7110 0.0926 4.7278 11 1 5.9282 -0.7530 4.2270 12 1 5.6416 1.5417 4.9570 13 6 1.7948 2.0229 -1.3040 14 6 1.8384 3.5208 -1.1447 15 6 3.0177 4.1984 -1.3845 16 6 3.0456 5.5797 -1.2393 17 9 4.1793 6.2771 -1.4701 18 6 1.8799 6.2258 -0.8459 19 6 0.7410 5.4787 -0.6196 20 7 0.7512 4.1684 -0.7727 21 1 -0.3634 0.5274 -0.8821 22 1 -0.3633 -1.0276 -0.0159 23 1 -0.3635 0.5001 0.8977 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8034 2.4628 0.2648 27 1 4.0126 0.7781 -0.2704 28 1 6.7832 1.3114 2.0966 29 1 2.5718 1.7088 -2.0009 30 1 0.8194 1.7268 -1.6900 31 1 3.9056 3.6619 -1.6849 32 1 1.8649 7.2982 -0.7191 33 1 -0.1693 5.9731 -0.3140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232493775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:21 Heat of formation + Delta-G solvation = -29.700473 kcal Electronic energy + Delta-G solvation = -16767.984415 eV Core-core repulsion = 13935.326422 eV Total energy + Delta-G solvation = -2832.657994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.12098 -41.13799 -38.48854 -34.82031 -33.27761 -32.91688 -31.32449 -29.25981 -26.71669 -24.71626 -24.18458 -23.28696 -21.45321 -18.70878 -18.47098 -18.20902 -16.92460 -16.90165 -16.76833 -16.10716 -15.94100 -15.62148 -15.12598 -14.75722 -14.37299 -14.20451 -14.01401 -13.80383 -13.20866 -12.83420 -12.60228 -12.59382 -12.46926 -12.29934 -11.82362 -11.61065 -11.23511 -10.65130 -10.61452 -10.51167 -10.11278 -9.01988 -8.21679 -6.30431 -0.01112 0.06206 1.38344 1.39323 1.52693 2.38341 2.59508 2.96180 3.11329 3.28480 3.44532 3.67893 3.91606 4.03801 4.25800 4.38564 4.44646 4.59062 4.68303 4.71121 4.78623 4.86903 4.97406 5.08349 5.13396 5.19518 5.36647 5.50147 5.64111 5.65630 6.05513 6.35298 6.60463 6.85726 6.98875 7.38670 8.89363 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.008282 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.800412 B = 3380.144356 C = 4337.200963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 N -0.536 5.536 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.098 3.902 14 C 0.168 3.832 15 C -0.213 4.213 16 C 0.126 3.874 17 F -0.136 7.136 18 C -0.203 4.203 19 C 0.128 3.872 20 N -0.492 5.492 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.010 0.990 27 H -0.036 1.036 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.180 0.820 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 6.246 -6.273 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.072 4.072 3 N -0.261 5.261 4 C 0.079 3.921 5 C -0.559 4.559 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.207 1.207 13 C -0.030 4.030 14 C 0.030 3.970 15 C -0.235 4.235 16 C 0.099 3.901 17 F -0.114 7.114 18 C -0.223 4.223 19 C -0.029 4.029 20 N -0.202 5.202 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.028 0.972 27 H -0.019 1.019 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.198 0.802 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.956 6.047 -5.772 13.781 hybrid contribution 2.437 -0.070 0.007 2.438 sum -8.519 5.977 -5.765 11.897 Atomic orbital electron populations 1.21699 0.93246 1.01882 1.02004 1.22029 0.96747 0.88205 1.00221 1.61964 1.19871 1.17863 1.26405 1.19464 0.83115 0.94759 0.94790 1.21482 0.92943 1.43801 0.97639 0.92126 1.25868 0.95511 0.95580 1.02625 1.70086 0.99132 1.49597 1.38512 0.85394 0.78411 0.77897 0.79307 1.18760 1.20221 1.20657 1.21006 1.02598 0.87993 0.91389 1.21018 0.87764 0.96636 0.91532 1.22109 1.00928 0.93855 1.06563 1.18207 0.83472 0.89680 0.98747 1.91505 1.49314 1.78746 1.91855 1.22508 0.91797 1.04140 1.03875 1.23389 0.98726 0.88386 0.92445 1.67534 1.29463 1.10931 1.12288 0.92115 0.90760 0.93217 0.95502 0.91916 0.97189 1.01867 0.92793 0.93768 0.87513 0.85185 0.80219 0.77750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.99 71.98 0.72 -3.16 16 2 C 0.06 2.12 5.52 86.30 0.48 2.60 16 3 N -0.54 -23.34 4.37 -905.36 -3.96 -27.30 16 4 C 0.20 10.94 4.54 85.56 0.39 11.33 16 5 C -0.52 -29.83 8.28 25.60 0.21 -29.62 16 6 H 0.06 3.45 7.26 -2.91 -0.02 3.43 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.10 3.59 5.15 85.56 0.44 4.03 16 14 C 0.17 6.08 5.96 42.52 0.25 6.34 16 15 C -0.21 -7.75 8.41 22.40 0.19 -7.57 16 16 C 0.13 4.03 7.40 22.61 0.17 4.20 16 17 F -0.14 -4.39 17.30 44.97 0.78 -3.62 16 18 C -0.20 -5.00 10.11 22.40 0.23 -4.77 16 19 C 0.13 3.18 11.18 84.64 0.95 4.13 16 20 N -0.49 -16.14 10.27 -184.00 -1.89 -18.03 16 21 H 0.06 1.64 6.51 -2.38 -0.02 1.62 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 25 H 0.06 2.69 6.59 -2.39 -0.02 2.67 16 26 H 0.01 0.58 6.28 -2.39 -0.01 0.56 16 27 H -0.04 -2.09 8.12 -2.38 -0.02 -2.11 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.04 1.59 7.89 -2.39 -0.02 1.57 16 30 H 0.11 3.36 6.23 -2.39 -0.01 3.35 16 31 H 0.13 4.97 7.96 -2.91 -0.02 4.95 16 32 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.28 283.67 2.82 -64.46 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.10 Total: 5.72 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.48 Total: -11.92 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -5.56 Total: -101.58 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.62 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.28 2.82 -64.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232493775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.759 kcal (2) G-P(sol) polarization free energy of solvation -67.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds