Wall clock time and date at job start Sun Mar 29 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48505 * 109.47171 * 270.00128 * 3 2 1 5 5 H 1.48493 * 109.47058 * 30.00046 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00101 * 3 2 1 7 7 C 1.37877 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00294 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00355 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47697 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47398 * 179.97438 * 10 9 7 12 12 C 1.29422 * 117.84068 * 95.00188 * 11 10 9 13 13 C 1.50164 * 123.99986 * 180.57666 * 12 11 10 14 14 C 1.52556 * 110.14480 * 343.69653 * 13 12 11 15 15 C 1.52925 * 109.50792 * 48.35277 * 14 13 12 16 16 C 1.50031 * 117.84628 * 275.02441 * 11 10 9 17 17 O 1.43930 * 110.04953 * 287.51441 * 14 13 12 18 18 C 1.44914 * 103.20670 * 201.57935 * 17 14 13 19 19 C 1.54487 * 102.96262 * 36.05621 * 18 17 14 20 20 O 1.43313 * 110.41768 * 169.86323 * 14 13 12 21 21 H 0.96999 * 120.00112 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47107 * 59.99726 * 9 7 2 23 23 H 1.09004 * 109.47108 * 300.00192 * 9 7 2 24 24 H 1.09005 * 109.46852 * 59.99499 * 10 9 7 25 25 H 1.08997 * 109.46868 * 300.00551 * 10 9 7 26 26 H 1.08001 * 118.00304 * 0.60201 * 12 11 10 27 27 H 1.08997 * 109.35875 * 223.48683 * 13 12 11 28 28 H 1.08997 * 109.35953 * 103.90154 * 13 12 11 29 29 H 1.09006 * 109.62680 * 53.32493 * 15 14 13 30 30 H 1.09006 * 109.63062 * 173.89794 * 15 14 13 31 31 H 1.09007 * 109.35064 * 282.85492 * 16 11 10 32 32 H 1.08997 * 109.35278 * 42.55261 * 16 11 10 33 33 H 1.08997 * 110.71292 * 277.68541 * 18 17 14 34 34 H 1.09003 * 110.71492 * 154.42266 * 18 17 14 35 35 H 1.09000 * 110.31658 * 97.15133 * 19 18 17 36 36 H 1.09002 * 110.31515 * 219.35059 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 6 6.1338 -2.7360 1.1374 13 6 7.6269 -2.7375 1.2978 14 6 8.2992 -3.0120 -0.0438 15 6 7.6876 -2.1089 -1.1157 16 6 6.2282 -2.5209 -1.3243 17 8 8.1238 -4.3928 -0.4102 18 6 9.1980 -4.6235 -1.3552 19 6 10.3513 -3.7689 -0.7843 20 8 9.7110 -2.7841 0.0485 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 3.6578 -3.1507 -0.8907 25 1 3.6585 -3.1502 0.8892 26 1 5.5282 -2.8235 2.0273 27 1 7.9129 -3.5111 2.0103 28 1 7.9510 -1.7666 1.6724 29 1 7.7316 -1.0702 -0.7880 30 1 8.2378 -2.2246 -2.0496 31 1 6.1942 -3.4826 -1.8363 32 1 5.7266 -1.7694 -1.9339 33 1 8.9173 -4.2774 -2.3499 34 1 9.4733 -5.6780 -1.3761 35 1 11.0230 -4.3883 -0.1899 36 1 10.8985 -3.2834 -1.5924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:22 Heat of formation + Delta-G solvation = -91.562216 kcal Electronic energy + Delta-G solvation = -17315.866129 eV Core-core repulsion = 14571.693163 eV Total energy + Delta-G solvation = -2744.172966 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00942 -37.47572 -35.06467 -33.67607 -31.93794 -30.89614 -29.79081 -28.06238 -24.70067 -23.46195 -23.05710 -21.59091 -20.20067 -17.92077 -17.09545 -16.78850 -16.25625 -15.84839 -15.10408 -14.34772 -14.21644 -13.79420 -13.59159 -13.33736 -12.91303 -12.80275 -12.62775 -12.44915 -12.06928 -12.02175 -11.45961 -11.43270 -11.29492 -10.88952 -10.58044 -10.33596 -10.07284 -9.80342 -9.60409 -9.50071 -9.13087 -8.51397 -8.21886 -6.01943 -3.99664 2.71721 3.32439 3.38040 3.39973 3.45063 3.80827 4.37820 4.47786 4.54516 4.65612 4.76217 5.03083 5.11607 5.29908 5.32375 5.34959 5.43523 5.47082 5.55208 5.63179 5.79297 5.86663 6.03091 6.09105 6.23217 6.31140 6.41254 6.59368 6.81325 6.95134 7.10652 7.32653 7.34878 7.61208 7.82620 8.56824 9.03325 9.60903 11.11634 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048221 B = 0.005319 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.524886 B = 5263.325970 C = 5418.739381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.075 4.075 11 C -0.095 4.095 12 C -0.181 4.181 13 C -0.070 4.070 14 C 0.256 3.744 15 C -0.147 4.147 16 C -0.076 4.076 17 O -0.355 6.355 18 C 0.010 3.990 19 C 0.020 3.980 20 O -0.378 6.378 21 H 0.262 0.738 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.814 -7.125 -2.506 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.043 4.043 10 C -0.113 4.113 11 C -0.095 4.095 12 C -0.199 4.199 13 C -0.107 4.107 14 C 0.180 3.820 15 C -0.185 4.185 16 C -0.113 4.113 17 O -0.275 6.275 18 C -0.067 4.067 19 C -0.056 4.056 20 O -0.300 6.300 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.029 0.971 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.571 -6.994 -2.295 21.848 hybrid contribution 0.417 0.904 -0.270 1.031 sum 20.988 -6.090 -2.564 22.004 Atomic orbital electron populations 1.69916 1.06301 1.26836 1.51349 1.25019 0.94704 0.99133 0.94600 0.86792 0.80468 0.83661 0.78499 1.20329 1.21406 1.18917 1.21183 0.89558 0.94464 1.50621 0.91032 1.19529 0.96759 0.91696 0.96311 1.20723 0.88857 1.00029 1.01668 1.21109 0.97280 0.97211 0.93949 1.21582 0.93735 1.06394 0.98167 1.20288 0.93593 1.02874 0.93913 1.23359 0.80892 0.81849 0.95896 1.22308 0.97200 1.00588 0.98447 1.20300 0.92677 1.02114 0.96247 1.89509 1.49938 1.27438 1.60629 1.24249 0.86345 1.01879 0.94183 1.23941 0.96160 0.90769 0.94774 1.88865 1.18738 1.53933 1.68434 0.92778 0.96555 0.97119 0.92170 0.92076 0.87046 0.90158 0.89295 0.89899 0.91413 0.90546 0.90117 0.90823 0.87743 0.90060 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.14 4.02 -27.88 -0.11 -0.25 16 10 C -0.08 -1.55 5.15 -27.89 -0.14 -1.69 16 11 C -0.10 -1.67 5.07 -100.96 -0.51 -2.19 16 12 C -0.18 -2.96 9.32 -35.85 -0.33 -3.30 16 13 C -0.07 -0.99 5.53 -28.37 -0.16 -1.15 16 14 C 0.26 3.51 1.07 -27.00 -0.03 3.48 16 15 C -0.15 -1.98 5.19 -26.73 -0.14 -2.12 16 16 C -0.08 -1.16 5.42 -28.17 -0.15 -1.32 16 17 O -0.36 -4.87 10.43 -59.27 -0.62 -5.49 16 18 C 0.01 0.10 7.34 37.94 0.28 0.38 16 19 C 0.02 0.19 8.07 37.94 0.31 0.49 16 20 O -0.38 -4.93 10.94 -59.27 -0.65 -5.57 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 22 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 23 H 0.01 0.25 7.53 -51.93 -0.39 -0.14 16 24 H 0.06 1.23 8.11 -51.93 -0.42 0.80 16 25 H 0.06 1.26 7.79 -51.93 -0.40 0.86 16 26 H 0.11 1.82 7.73 -52.49 -0.41 1.42 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.78 7.31 -51.93 -0.38 0.40 16 31 H 0.08 1.11 7.90 -51.93 -0.41 0.70 16 32 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -32.26 289.22 -7.95 -40.21 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.72 Total: -2.19 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.42 Total: -21.22 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.77 Total: -27.52 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.27 Total: -11.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.26 -7.95 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.350 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds