Wall clock time and date at job start Sun Mar 29 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48505 * 109.47171 * 270.00128 * 3 2 1 5 5 H 1.48493 * 109.47058 * 30.00046 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00101 * 3 2 1 7 7 C 1.37877 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00294 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00355 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47697 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47398 * 179.97438 * 10 9 7 12 12 C 1.29422 * 117.84068 * 95.00188 * 11 10 9 13 13 C 1.50164 * 123.99986 * 180.57666 * 12 11 10 14 14 C 1.52556 * 110.14480 * 343.69653 * 13 12 11 15 15 C 1.52925 * 109.50792 * 48.35277 * 14 13 12 16 16 C 1.50031 * 117.84628 * 275.02441 * 11 10 9 17 17 O 1.43930 * 110.04953 * 287.51441 * 14 13 12 18 18 C 1.44914 * 103.20670 * 201.57935 * 17 14 13 19 19 C 1.54487 * 102.96262 * 36.05621 * 18 17 14 20 20 O 1.43313 * 110.41768 * 169.86323 * 14 13 12 21 21 H 0.96999 * 120.00112 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47107 * 59.99726 * 9 7 2 23 23 H 1.09004 * 109.47108 * 300.00192 * 9 7 2 24 24 H 1.09005 * 109.46852 * 59.99499 * 10 9 7 25 25 H 1.08997 * 109.46868 * 300.00551 * 10 9 7 26 26 H 1.08001 * 118.00304 * 0.60201 * 12 11 10 27 27 H 1.08997 * 109.35875 * 223.48683 * 13 12 11 28 28 H 1.08997 * 109.35953 * 103.90154 * 13 12 11 29 29 H 1.09006 * 109.62680 * 53.32493 * 15 14 13 30 30 H 1.09006 * 109.63062 * 173.89794 * 15 14 13 31 31 H 1.09007 * 109.35064 * 282.85492 * 16 11 10 32 32 H 1.08997 * 109.35278 * 42.55261 * 16 11 10 33 33 H 1.08997 * 110.71292 * 277.68541 * 18 17 14 34 34 H 1.09003 * 110.71492 * 154.42266 * 18 17 14 35 35 H 1.09000 * 110.31658 * 97.15133 * 19 18 17 36 36 H 1.09002 * 110.31515 * 219.35059 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 6 6.1338 -2.7360 1.1374 13 6 7.6269 -2.7375 1.2978 14 6 8.2992 -3.0120 -0.0438 15 6 7.6876 -2.1089 -1.1157 16 6 6.2282 -2.5209 -1.3243 17 8 8.1238 -4.3928 -0.4102 18 6 9.1980 -4.6235 -1.3552 19 6 10.3513 -3.7689 -0.7843 20 8 9.7110 -2.7841 0.0485 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8745 -0.6801 -0.8911 24 1 3.6578 -3.1507 -0.8907 25 1 3.6585 -3.1502 0.8892 26 1 5.5282 -2.8235 2.0273 27 1 7.9129 -3.5111 2.0103 28 1 7.9510 -1.7666 1.6724 29 1 7.7316 -1.0702 -0.7880 30 1 8.2378 -2.2246 -2.0496 31 1 6.1942 -3.4826 -1.8363 32 1 5.7266 -1.7694 -1.9339 33 1 8.9173 -4.2774 -2.3499 34 1 9.4733 -5.6780 -1.3761 35 1 11.0230 -4.3883 -0.1899 36 1 10.8985 -3.2834 -1.5924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060653.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:22 Heat of formation + Delta-G solvation = -111.678167 kcal Electronic energy + Delta-G solvation = -17316.738422 eV Core-core repulsion = 14571.693163 eV Total energy + Delta-G solvation = -2745.045259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93444 -38.72360 -35.98491 -35.52246 -33.74053 -32.01141 -31.08602 -29.32282 -26.41407 -24.56224 -23.87935 -23.04181 -21.80199 -19.21361 -18.78608 -17.95226 -17.22612 -16.69976 -16.39104 -16.16564 -15.53549 -15.20441 -14.72812 -14.63711 -14.42453 -14.00172 -13.88631 -13.55483 -13.51891 -13.28188 -12.90166 -12.76974 -12.69885 -12.29298 -11.94348 -11.86793 -11.58673 -11.53294 -11.19172 -11.03430 -10.77206 -10.50118 -9.59015 -8.30382 -6.34648 1.34538 1.36317 1.38459 1.49526 2.35597 2.54875 2.91578 3.04941 3.53075 3.67882 3.75298 3.98852 4.10078 4.13276 4.27827 4.36108 4.47672 4.53458 4.60343 4.63747 4.74841 4.78458 4.80628 4.86414 4.93897 4.97836 5.09329 5.15158 5.20781 5.43469 5.48903 5.61599 5.75733 6.09156 6.18771 6.28089 6.73057 7.30134 8.86630 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048221 B = 0.005319 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.524886 B = 5263.325970 C = 5418.739381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.535 4.535 8 H 0.031 0.969 9 C 0.001 3.999 10 C -0.068 4.068 11 C -0.112 4.112 12 C -0.170 4.170 13 C -0.072 4.072 14 C 0.257 3.743 15 C -0.143 4.143 16 C -0.073 4.073 17 O -0.380 6.380 18 C 0.004 3.996 19 C 0.015 3.985 20 O -0.395 6.395 21 H 0.267 0.733 22 H 0.016 0.984 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.776 -6.516 -3.048 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.036 4.036 10 C -0.106 4.106 11 C -0.112 4.112 12 C -0.188 4.188 13 C -0.109 4.109 14 C 0.181 3.819 15 C -0.181 4.181 16 C -0.110 4.110 17 O -0.301 6.301 18 C -0.072 4.072 19 C -0.061 4.061 20 O -0.316 6.316 21 H 0.076 0.924 22 H 0.034 0.966 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.113 0.887 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.554 -6.407 -2.844 24.575 hybrid contribution -0.534 0.579 -0.078 0.791 sum 23.020 -5.829 -2.922 23.926 Atomic orbital electron populations 1.70068 1.08305 1.28202 1.52671 1.26009 0.95601 1.03505 0.94023 0.85657 0.79451 0.78207 0.79372 1.18856 1.20815 1.17234 1.21529 0.92157 0.93136 1.50464 0.95084 1.19426 0.93516 0.94305 0.96385 1.20542 0.91551 0.97500 1.00975 1.20997 0.95165 0.99343 0.95694 1.21766 0.95300 1.04178 0.97533 1.20317 0.91845 1.03659 0.95078 1.23216 0.81409 0.82097 0.95193 1.22271 0.95945 1.00278 0.99590 1.20262 0.93744 1.02295 0.94704 1.89483 1.51510 1.27284 1.61825 1.24536 0.85306 1.03445 0.93878 1.24217 0.96111 0.90498 0.95304 1.88838 1.18284 1.55069 1.69447 0.92441 0.96599 0.96262 0.92707 0.93097 0.87639 0.89441 0.88392 0.90209 0.89241 0.90044 0.90655 0.89685 0.85602 0.88683 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 45.20 27.47 68.60 1.88 47.09 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 9 C 0.00 0.05 4.02 29.85 0.12 0.17 16 10 C -0.07 -2.83 5.15 29.85 0.15 -2.68 16 11 C -0.11 -3.83 5.07 -15.09 -0.08 -3.90 16 12 C -0.17 -5.37 9.32 27.09 0.25 -5.12 16 13 C -0.07 -1.91 5.53 29.53 0.16 -1.75 16 14 C 0.26 6.43 1.07 30.42 0.03 6.46 16 15 C -0.14 -3.48 5.19 30.59 0.16 -3.32 16 16 C -0.07 -2.11 5.42 29.66 0.16 -1.95 16 17 O -0.38 -9.53 10.43 -126.00 -1.31 -10.85 16 18 C 0.00 0.07 7.34 72.49 0.53 0.60 16 19 C 0.01 0.22 8.07 72.49 0.58 0.80 16 20 O -0.39 -9.14 10.94 -126.00 -1.38 -10.52 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 23 H 0.02 0.90 7.53 -2.38 -0.02 0.88 16 24 H 0.05 2.28 8.11 -2.38 -0.02 2.26 16 25 H 0.05 2.16 7.79 -2.39 -0.02 2.14 16 26 H 0.11 3.40 7.73 -2.91 -0.02 3.37 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.09 1.76 7.31 -2.38 -0.02 1.74 16 31 H 0.08 2.23 7.90 -2.38 -0.02 2.21 16 32 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 33 H 0.08 1.12 7.54 -2.39 -0.02 1.10 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.95 289.22 3.27 -66.69 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.99 Total: 9.68 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 2.79 Total: -41.51 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -2.69 Total: -21.37 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -69.95 3.27 -66.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060653.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.992 kcal (2) G-P(sol) polarization free energy of solvation -69.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds