Wall clock time and date at job start Sun Mar 29 2020 21:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00068 * 2 1 4 4 C 1.38767 * 120.04088 * 0.02562 * 3 2 1 5 5 C 1.38139 * 119.99202 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.08125 * 359.72789 * 5 4 3 7 7 C 1.50693 * 119.95739 * 180.29967 * 6 5 4 8 8 C 1.52997 * 109.47050 * 265.24762 * 7 6 5 9 9 C 1.53003 * 109.47370 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47389 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99839 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00472 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99617 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00535 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47324 * 59.99929 * 14 12 10 16 16 H 1.48496 * 109.47619 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47046 * 300.00742 * 14 12 10 18 18 C 1.38479 * 120.07990 * 0.54383 * 6 5 4 19 19 F 1.35104 * 119.99308 * 179.72616 * 18 6 5 20 20 C 1.38382 * 120.00772 * 359.45908 * 18 6 5 21 21 H 1.09000 * 109.47090 * 300.00573 * 1 2 3 22 22 H 1.08998 * 109.46735 * 59.99982 * 1 2 3 23 23 H 1.08997 * 109.47359 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00641 * 359.97438 * 4 3 2 25 25 H 1.08007 * 119.95527 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.47458 * 25.25186 * 7 6 5 27 27 H 1.09002 * 109.47256 * 145.25151 * 7 6 5 28 28 H 1.08999 * 109.47336 * 300.00499 * 8 7 6 29 29 H 1.09002 * 109.46773 * 60.00093 * 8 7 6 30 30 H 1.09005 * 109.46692 * 300.00190 * 9 8 7 31 31 H 1.08994 * 109.47182 * 59.99881 * 9 8 7 32 32 H 0.96995 * 119.99726 * 179.97438 * 13 12 10 33 33 H 1.07996 * 120.03824 * 180.25066 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9193 3.6055 0.0011 6 6 3.2999 3.6786 0.0068 7 6 3.9822 5.0222 0.0142 8 6 4.3253 5.4278 -1.4206 9 6 5.0187 6.7917 -1.4131 10 6 5.3562 7.1915 -2.8264 11 1 5.1011 6.5383 -3.6479 12 6 5.9895 8.3915 -3.0709 13 7 6.2996 9.1871 -2.0706 14 14 6.4083 8.8868 -4.8226 15 1 5.1617 8.9690 -5.6253 16 1 7.0812 10.2105 -4.8154 17 1 7.3156 7.8740 -5.4198 18 6 4.0564 2.5188 0.0005 19 9 5.4054 2.5923 0.0005 20 6 3.4307 1.2844 0.0000 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.2126 2.3196 0.0005 25 1 1.3311 4.5114 0.0011 26 1 3.3164 5.7655 0.4525 27 1 4.8973 4.9617 0.6033 28 1 4.9912 4.6845 -1.8590 29 1 3.4102 5.4883 -2.0098 30 1 4.3531 7.5352 -0.9746 31 1 5.9338 6.7308 -0.8241 32 1 6.7454 10.0312 -2.2425 33 1 4.0202 0.3796 -0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250062923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:36 Heat of formation + Delta-G solvation = -81.554548 kcal Electronic energy + Delta-G solvation = -16098.222813 eV Core-core repulsion = 13231.023506 eV Total energy + Delta-G solvation = -2867.199306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.70908 -40.14934 -37.65986 -34.50858 -32.47141 -30.88732 -29.84183 -27.80028 -26.25488 -23.55453 -22.75699 -21.20524 -20.02183 -18.50528 -16.95890 -16.30305 -16.01331 -15.97499 -15.34171 -15.20104 -14.65982 -14.40239 -13.89241 -13.57205 -12.86399 -12.67061 -12.49814 -12.33810 -12.09591 -11.57622 -11.26503 -11.06971 -10.98679 -10.70176 -10.53503 -10.45282 -9.63501 -9.31113 -9.06923 -8.85869 -8.30237 -8.04619 -5.95639 -3.97711 1.16129 1.31466 2.99624 3.36396 3.40329 3.43291 3.59445 4.48114 4.49739 4.65270 4.85538 4.90588 4.92602 5.03725 5.19988 5.31359 5.37172 5.39956 5.76514 6.02108 6.03164 6.10014 6.22364 6.37364 6.41775 6.74613 6.82954 6.92770 7.16518 7.22723 7.72323 7.87727 8.04914 8.47974 9.09176 9.65947 11.15734 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.041933 B = 0.004387 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.578471 B = 6380.291856 C = 6519.120042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.139 3.861 4 C -0.216 4.216 5 C -0.053 4.053 6 C -0.133 4.133 7 C -0.081 4.081 8 C -0.103 4.103 9 C 0.021 3.979 10 C -0.520 4.520 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.139 3.861 19 F -0.128 7.128 20 C -0.189 4.189 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.099 0.901 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 -15.977 6.007 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.094 3.906 4 C -0.235 4.235 5 C -0.071 4.071 6 C -0.134 4.134 7 C -0.118 4.118 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.119 3.881 19 F -0.107 7.107 20 C -0.209 4.209 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.117 0.883 24 H 0.149 0.851 25 H 0.154 0.846 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.560 -15.996 6.047 20.641 hybrid contribution 0.248 0.449 -0.982 1.108 sum -11.312 -15.546 5.065 19.882 Atomic orbital electron populations 1.23063 0.78244 1.03870 1.01549 1.86044 1.21456 1.26754 1.88815 1.18526 0.91343 0.84285 0.96441 1.21237 1.00152 0.92119 1.10011 1.20767 0.93090 0.97430 0.95786 1.20208 0.94022 0.95557 1.03622 1.20698 0.99839 0.90835 1.00416 1.21630 1.00007 1.00185 0.92265 1.19108 0.95399 0.90092 0.96981 1.21236 1.37987 1.03587 0.93015 0.92797 1.25022 0.95890 0.96601 0.96956 1.69959 1.41690 1.11294 1.30678 0.86663 0.78606 0.77641 0.85125 1.20274 1.21296 1.20241 1.17162 0.77179 0.93031 1.00685 1.91526 1.28627 1.97060 1.93448 1.20171 0.92479 0.97469 1.10731 0.92558 0.92471 0.88281 0.85110 0.84628 0.90934 0.91086 0.93322 0.93293 0.96579 0.96516 0.92993 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.58 10.50 -19.43 -0.20 -3.78 16 3 C 0.14 1.76 6.68 -39.23 -0.26 1.50 16 4 C -0.22 -2.52 9.04 -39.42 -0.36 -2.88 16 5 C -0.05 -0.69 9.67 -39.61 -0.38 -1.08 16 6 C -0.13 -2.08 5.14 -104.53 -0.54 -2.62 16 7 C -0.08 -1.43 5.11 -27.89 -0.14 -1.57 16 8 C -0.10 -2.21 5.13 -26.73 -0.14 -2.35 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 11 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 14 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.14 2.18 7.24 -39.44 -0.29 1.90 16 19 F -0.13 -2.19 16.56 2.25 0.04 -2.16 16 20 C -0.19 -2.61 9.97 -39.37 -0.39 -3.01 16 21 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 22 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 23 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 25 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 26 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 27 H 0.07 1.29 7.79 -51.93 -0.40 0.88 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 288.88 15.07 4.35 4.35 Total: -1.00 -31.83 288.88 -6.60 -38.43 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.45 Total: -4.82 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.05 Total: -22.39 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.74 Total: -26.69 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.83 -6.60 -38.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250062923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.121 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds