Wall clock time and date at job start Sun Mar 29 2020 21:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00068 * 2 1 4 4 C 1.38767 * 120.04088 * 0.02562 * 3 2 1 5 5 C 1.38139 * 119.99202 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.08125 * 359.72789 * 5 4 3 7 7 C 1.50693 * 119.95739 * 180.29967 * 6 5 4 8 8 C 1.52997 * 109.47050 * 265.24762 * 7 6 5 9 9 C 1.53003 * 109.47370 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47389 * 180.02562 * 9 8 7 11 11 H 1.08007 * 119.99839 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00472 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99617 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00535 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47324 * 59.99929 * 14 12 10 16 16 H 1.48496 * 109.47619 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47046 * 300.00742 * 14 12 10 18 18 C 1.38479 * 120.07990 * 0.54383 * 6 5 4 19 19 F 1.35104 * 119.99308 * 179.72616 * 18 6 5 20 20 C 1.38382 * 120.00772 * 359.45908 * 18 6 5 21 21 H 1.09000 * 109.47090 * 300.00573 * 1 2 3 22 22 H 1.08998 * 109.46735 * 59.99982 * 1 2 3 23 23 H 1.08997 * 109.47359 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00641 * 359.97438 * 4 3 2 25 25 H 1.08007 * 119.95527 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.47458 * 25.25186 * 7 6 5 27 27 H 1.09002 * 109.47256 * 145.25151 * 7 6 5 28 28 H 1.08999 * 109.47336 * 300.00499 * 8 7 6 29 29 H 1.09002 * 109.46773 * 60.00093 * 8 7 6 30 30 H 1.09005 * 109.46692 * 300.00190 * 9 8 7 31 31 H 1.08994 * 109.47182 * 59.99881 * 9 8 7 32 32 H 0.96995 * 119.99726 * 179.97438 * 13 12 10 33 33 H 1.07996 * 120.03824 * 180.25066 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9193 3.6055 0.0011 6 6 3.2999 3.6786 0.0068 7 6 3.9822 5.0222 0.0142 8 6 4.3253 5.4278 -1.4206 9 6 5.0187 6.7917 -1.4131 10 6 5.3562 7.1915 -2.8264 11 1 5.1011 6.5383 -3.6479 12 6 5.9895 8.3915 -3.0709 13 7 6.2996 9.1871 -2.0706 14 14 6.4083 8.8868 -4.8226 15 1 5.1617 8.9690 -5.6253 16 1 7.0812 10.2105 -4.8154 17 1 7.3156 7.8740 -5.4198 18 6 4.0564 2.5188 0.0005 19 9 5.4054 2.5923 0.0005 20 6 3.4307 1.2844 0.0000 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.2126 2.3196 0.0005 25 1 1.3311 4.5114 0.0011 26 1 3.3164 5.7655 0.4525 27 1 4.8973 4.9617 0.6033 28 1 4.9912 4.6845 -1.8590 29 1 3.4102 5.4883 -2.0098 30 1 4.3531 7.5352 -0.9746 31 1 5.9338 6.7308 -0.8241 32 1 6.7454 10.0312 -2.2425 33 1 4.0202 0.3796 -0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250062923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:35 Heat of formation + Delta-G solvation = -99.679546 kcal Electronic energy + Delta-G solvation = -16099.008772 eV Core-core repulsion = 13231.023506 eV Total energy + Delta-G solvation = -2867.985265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.94940 -41.07850 -38.68561 -36.26865 -34.37301 -32.02642 -31.28407 -28.78155 -27.67655 -25.25157 -23.84243 -22.61690 -21.67624 -19.44754 -18.48193 -18.00996 -17.02370 -16.91787 -16.61794 -16.34000 -16.28806 -15.72775 -15.42449 -14.71978 -14.36644 -14.14516 -13.86008 -13.37729 -13.29754 -12.99090 -12.91645 -12.60753 -12.54793 -12.32520 -11.92973 -11.76553 -11.47713 -11.34147 -11.10755 -10.54946 -9.90712 -9.13621 -8.19775 -6.31346 0.11481 0.25704 1.39339 1.42909 1.50907 2.19673 2.40987 2.55031 3.12697 3.41672 3.72263 3.80192 3.94975 4.20561 4.28203 4.41115 4.45197 4.47804 4.50332 4.72824 4.78685 4.89031 5.03905 5.06860 5.17488 5.22752 5.26111 5.44010 5.51431 5.68698 5.75987 5.85837 6.25485 6.35280 6.84923 7.37645 8.91791 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.041933 B = 0.004387 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.578471 B = 6380.291856 C = 6519.120042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.145 3.855 4 C -0.205 4.205 5 C -0.050 4.050 6 C -0.155 4.155 7 C -0.070 4.070 8 C -0.089 4.089 9 C 0.024 3.976 10 C -0.547 4.547 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.265 1.265 16 H -0.281 1.281 17 H -0.269 1.269 18 C 0.117 3.883 19 F -0.146 7.146 20 C -0.198 4.198 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.121 0.879 24 H 0.167 0.833 25 H 0.156 0.844 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.056 0.944 30 H -0.001 1.001 31 H -0.012 1.012 32 H 0.264 0.736 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.899 -16.994 5.177 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.099 3.901 4 C -0.223 4.223 5 C -0.068 4.068 6 C -0.156 4.156 7 C -0.108 4.108 8 C -0.126 4.126 9 C -0.013 4.013 10 C -0.585 4.585 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.194 1.194 18 C 0.097 3.903 19 F -0.125 7.125 20 C -0.217 4.217 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.139 0.861 24 H 0.185 0.815 25 H 0.174 0.826 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.697 -17.034 5.222 22.473 hybrid contribution 0.809 0.672 -0.678 1.251 sum -12.888 -16.362 4.545 21.318 Atomic orbital electron populations 1.23443 0.75781 1.05908 1.02744 1.86049 1.23965 1.25963 1.88313 1.18643 0.91043 0.85354 0.95092 1.21575 1.01866 0.90900 1.07974 1.21021 0.91998 0.99045 0.94686 1.20057 0.95196 0.94023 1.06318 1.20465 0.99904 0.92848 0.97551 1.21393 0.99332 0.96812 0.95098 1.19021 0.94235 0.92546 0.95493 1.21682 1.38478 1.04157 0.94162 0.92474 1.25991 0.95496 0.96495 1.01825 1.70092 1.42260 1.11772 1.33206 0.85498 0.78820 0.77437 0.79288 1.18927 1.20586 1.19431 1.17425 0.76599 0.94041 1.02207 1.91474 1.29963 1.97200 1.93815 1.20290 0.93551 0.96984 1.10898 0.91107 0.91383 0.86081 0.81543 0.82633 0.89761 0.92468 0.94480 0.92539 0.98281 0.99352 0.92701 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.49 10.50 -92.44 -0.97 -7.46 16 3 C 0.14 3.32 6.68 22.50 0.15 3.47 16 4 C -0.20 -4.09 9.04 22.37 0.20 -3.89 16 5 C -0.05 -1.19 9.67 22.25 0.22 -0.98 16 6 C -0.15 -4.78 5.14 -19.81 -0.10 -4.89 16 7 C -0.07 -2.54 5.11 29.84 0.15 -2.39 16 8 C -0.09 -3.89 5.13 30.59 0.16 -3.73 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.55 -32.37 9.11 25.60 0.23 -32.13 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 13 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 14 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.12 3.69 7.24 22.36 0.16 3.86 16 19 F -0.15 -5.21 16.56 44.97 0.74 -4.47 16 20 C -0.20 -5.32 9.97 22.41 0.22 -5.10 16 21 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 22 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 23 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.17 2.09 6.30 -2.91 -0.02 2.08 16 25 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.08 2.78 8.05 -2.39 -0.02 2.76 16 27 H 0.06 2.18 7.79 -2.39 -0.02 2.16 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -69.60 288.88 6.29 -63.30 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.09 Total: 1.69 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 3.12 Total: -42.59 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.28 Total: -57.78 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.97 Total: -7.46 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.74 Total: -4.47 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -69.60 6.29 -63.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250062923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.376 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds