Wall clock time and date at job start Sun Mar 29 2020 21:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35959 * 117.00076 * 2 1 4 4 C 1.38949 * 120.06680 * 269.98194 * 3 2 1 5 5 F 1.35104 * 120.04417 * 0.03779 * 4 3 2 6 6 C 1.38289 * 119.90418 * 180.02562 * 4 3 2 7 7 C 1.38292 * 120.03246 * 0.02562 * 6 4 3 8 8 C 1.38222 * 120.12575 * 359.69929 * 7 6 4 9 9 C 1.38231 * 120.09394 * 0.55385 * 8 7 6 10 10 C 1.50696 * 120.01444 * 179.74660 * 9 8 7 11 11 C 1.52997 * 109.47055 * 264.72593 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 H 1.08996 * 109.47032 * 299.99588 * 1 2 3 22 22 H 1.09000 * 109.46750 * 59.99649 * 1 2 3 23 23 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.98249 * 180.02562 * 6 4 3 25 25 H 1.08000 * 119.94202 * 179.97438 * 7 6 4 26 26 H 1.08003 * 119.95718 * 180.30570 * 8 7 6 27 27 H 1.08996 * 109.47197 * 144.72795 * 10 9 8 28 28 H 1.09001 * 109.47328 * 24.72322 * 10 9 8 29 29 H 1.09001 * 109.47502 * 60.00512 * 11 10 9 30 30 H 1.09001 * 109.47289 * 300.00308 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 32 32 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 33 33 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3627 1.8315 -1.2025 5 9 2.0566 1.2318 -2.3739 6 6 2.9910 3.0634 -1.1986 7 6 3.3043 3.6767 0.0006 8 6 2.9850 3.0637 1.1976 9 6 2.3617 1.8299 1.1998 10 6 2.0196 1.1605 2.5059 11 6 3.1342 0.1836 2.8856 12 6 2.7865 -0.4965 4.2113 13 6 3.8847 -1.4583 4.5856 14 1 4.7444 -1.5733 3.9421 15 6 3.7914 -2.1921 5.7491 16 7 2.7444 -2.0525 6.5325 17 14 5.1523 -3.3848 6.2127 18 1 6.1705 -2.6799 7.0322 19 1 4.5795 -4.5096 6.9950 20 1 5.7889 -3.9133 4.9794 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.2371 3.5467 -2.1325 25 1 3.7953 4.6386 0.0020 26 1 3.2265 3.5474 2.1325 27 1 1.0805 0.6172 2.4007 28 1 1.9172 1.9156 3.2853 29 1 4.0733 0.7269 2.9909 30 1 3.2367 -0.5715 2.1061 31 1 2.6839 0.2583 4.9909 32 1 1.8476 -1.0398 4.1057 33 1 2.6785 -2.5690 7.3509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:46 Heat of formation + Delta-G solvation = -79.643601 kcal Electronic energy + Delta-G solvation = -16465.190574 eV Core-core repulsion = 13598.074133 eV Total energy + Delta-G solvation = -2867.116441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84567 -39.88696 -37.26849 -34.71276 -32.58868 -30.28621 -30.04256 -27.27692 -26.40786 -23.75012 -22.42770 -21.43770 -20.05515 -17.84597 -17.08421 -16.75249 -16.11168 -15.97205 -15.01257 -14.75069 -14.54911 -14.42339 -13.89882 -13.46544 -13.07328 -12.63175 -12.27611 -12.20932 -11.81732 -11.54436 -11.43568 -11.09457 -10.75227 -10.64669 -10.46762 -9.95386 -9.60778 -9.34572 -9.09123 -8.60471 -8.53433 -8.30810 -5.96266 -3.97944 1.04527 1.16795 3.34779 3.36264 3.40808 3.45305 3.82652 4.23271 4.49769 4.71336 4.89691 5.19320 5.19697 5.31348 5.37044 5.39665 5.51370 5.65646 5.74271 5.97257 6.01822 6.05732 6.26933 6.39869 6.41735 6.68949 6.83192 6.93696 7.18331 7.52764 7.72183 7.87223 8.04375 8.47922 9.09078 9.65866 11.15166 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.005182 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.588054 B = 5402.218467 C = 5637.014793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.062 3.938 4 C 0.079 3.921 5 F -0.137 7.137 6 C -0.158 4.158 7 C -0.095 4.095 8 C -0.118 4.118 9 C -0.055 4.055 10 C -0.081 4.081 11 C -0.101 4.101 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.042 0.958 23 H 0.097 0.903 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 11.098 -13.637 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C 0.017 3.983 4 C 0.059 3.941 5 F -0.116 7.116 6 C -0.177 4.177 7 C -0.113 4.113 8 C -0.137 4.137 9 C -0.056 4.056 10 C -0.118 4.118 11 C -0.138 4.138 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.116 0.884 24 H 0.153 0.847 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.301 10.818 -13.522 17.629 hybrid contribution 0.528 -0.641 0.058 0.832 sum -2.773 10.177 -13.464 17.104 Atomic orbital electron populations 1.23031 0.78945 1.03637 1.00391 1.86145 1.19855 1.23592 1.94103 1.18562 1.00993 0.87936 0.90813 1.18123 1.02356 0.92853 0.80768 1.91472 1.91232 1.83323 1.45528 1.20986 1.02411 0.94378 0.99933 1.21001 0.98928 1.00005 0.91390 1.21127 0.99083 0.94734 0.98717 1.20481 0.96258 0.93555 0.95301 1.20765 1.00980 0.98909 0.91168 1.21607 0.95371 0.96460 1.00376 1.19103 0.96888 0.95045 0.90436 1.21272 1.05603 1.22672 1.06079 0.92720 1.25012 0.95771 0.97157 0.96514 1.69961 1.28708 1.41770 1.13249 0.86611 0.82175 0.80822 0.78511 1.20694 1.21244 1.19868 0.93101 0.93958 0.88438 0.84747 0.84932 0.84753 0.91108 0.91026 0.93375 0.92750 0.96683 0.96583 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.80 101.05 1.09 1.53 16 2 O -0.32 -5.38 9.56 -19.61 -0.19 -5.57 16 3 C 0.06 0.98 5.70 -39.18 -0.22 0.76 16 4 C 0.08 1.14 7.31 -39.30 -0.29 0.85 16 5 F -0.14 -2.05 17.11 2.25 0.04 -2.01 16 6 C -0.16 -1.85 10.02 -39.54 -0.40 -2.25 16 7 C -0.10 -1.03 10.04 -39.57 -0.40 -1.43 16 8 C -0.12 -1.51 9.67 -39.59 -0.38 -1.89 16 9 C -0.06 -0.85 5.15 -104.49 -0.54 -1.39 16 10 C -0.08 -1.40 5.07 -27.89 -0.14 -1.54 16 11 C -0.10 -2.14 5.14 -26.73 -0.14 -2.28 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 25 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 27 H 0.07 1.22 6.42 -51.93 -0.33 0.89 16 28 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -31.81 289.97 -6.50 -38.30 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -4.47 Total: -4.60 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -1.96 Total: -20.99 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.19 Total: -5.57 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.81 -6.50 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.342 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds