Wall clock time and date at job start Sun Mar 29 2020 21:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35959 * 117.00076 * 2 1 4 4 C 1.38949 * 120.06680 * 269.98194 * 3 2 1 5 5 F 1.35104 * 120.04417 * 0.03779 * 4 3 2 6 6 C 1.38289 * 119.90418 * 180.02562 * 4 3 2 7 7 C 1.38292 * 120.03246 * 0.02562 * 6 4 3 8 8 C 1.38222 * 120.12575 * 359.69929 * 7 6 4 9 9 C 1.38231 * 120.09394 * 0.55385 * 8 7 6 10 10 C 1.50696 * 120.01444 * 179.74660 * 9 8 7 11 11 C 1.52997 * 109.47055 * 264.72593 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 H 1.08996 * 109.47032 * 299.99588 * 1 2 3 22 22 H 1.09000 * 109.46750 * 59.99649 * 1 2 3 23 23 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.98249 * 180.02562 * 6 4 3 25 25 H 1.08000 * 119.94202 * 179.97438 * 7 6 4 26 26 H 1.08003 * 119.95718 * 180.30570 * 8 7 6 27 27 H 1.08996 * 109.47197 * 144.72795 * 10 9 8 28 28 H 1.09001 * 109.47328 * 24.72322 * 10 9 8 29 29 H 1.09001 * 109.47502 * 60.00512 * 11 10 9 30 30 H 1.09001 * 109.47289 * 300.00308 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 32 32 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 33 33 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3627 1.8315 -1.2025 5 9 2.0566 1.2318 -2.3739 6 6 2.9910 3.0634 -1.1986 7 6 3.3043 3.6767 0.0006 8 6 2.9850 3.0637 1.1976 9 6 2.3617 1.8299 1.1998 10 6 2.0196 1.1605 2.5059 11 6 3.1342 0.1836 2.8856 12 6 2.7865 -0.4965 4.2113 13 6 3.8847 -1.4583 4.5856 14 1 4.7444 -1.5733 3.9421 15 6 3.7914 -2.1921 5.7491 16 7 2.7444 -2.0525 6.5325 17 14 5.1523 -3.3848 6.2127 18 1 6.1705 -2.6799 7.0322 19 1 4.5795 -4.5096 6.9950 20 1 5.7889 -3.9133 4.9794 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.2371 3.5467 -2.1325 25 1 3.7953 4.6386 0.0020 26 1 3.2265 3.5474 2.1325 27 1 1.0805 0.6172 2.4007 28 1 1.9172 1.9156 3.2853 29 1 4.0733 0.7269 2.9909 30 1 3.2367 -0.5715 2.1061 31 1 2.6839 0.2583 4.9909 32 1 1.8476 -1.0398 4.1057 33 1 2.6785 -2.5690 7.3509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:45 Heat of formation + Delta-G solvation = -97.687579 kcal Electronic energy + Delta-G solvation = -16465.973020 eV Core-core repulsion = 13598.074133 eV Total energy + Delta-G solvation = -2867.898887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.93352 -40.98168 -38.34497 -36.44851 -34.49945 -31.85485 -31.05401 -28.74048 -27.70877 -25.49807 -23.45848 -22.85536 -21.75287 -18.96593 -18.46358 -18.14990 -17.69241 -17.08452 -16.52581 -16.06680 -15.73328 -15.69004 -15.40634 -14.82401 -14.32418 -14.24497 -13.90580 -13.26157 -13.13987 -13.07834 -12.79985 -12.66589 -12.48877 -12.35495 -12.11548 -11.53130 -11.34172 -11.20817 -10.92318 -10.54699 -9.69226 -9.62547 -8.19837 -6.30702 0.03604 0.14346 1.39374 1.40941 1.52248 2.36801 2.41846 2.77737 3.12942 3.17687 3.70944 3.90858 4.17580 4.23921 4.32448 4.35523 4.41539 4.46615 4.53094 4.66581 4.82035 4.89298 5.06652 5.08194 5.20301 5.24468 5.34109 5.48846 5.53121 5.73231 5.77879 5.86532 6.26511 6.43851 6.85373 7.38225 8.91862 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033302 B = 0.005182 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.588054 B = 5402.218467 C = 5637.014793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.042 3.958 4 C 0.056 3.944 5 F -0.145 7.145 6 C -0.144 4.144 7 C -0.082 4.082 8 C -0.116 4.116 9 C -0.079 4.079 10 C -0.070 4.070 11 C -0.085 4.085 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.055 0.945 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.267 1.267 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.108 0.892 24 H 0.166 0.834 25 H 0.175 0.825 26 H 0.153 0.847 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.037 0.963 31 H -0.002 1.002 32 H -0.010 1.010 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 12.543 -14.400 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C -0.003 4.003 4 C 0.037 3.963 5 F -0.124 7.124 6 C -0.163 4.163 7 C -0.100 4.100 8 C -0.134 4.134 9 C -0.080 4.080 10 C -0.108 4.108 11 C -0.122 4.122 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.126 0.874 24 H 0.183 0.817 25 H 0.193 0.807 26 H 0.170 0.830 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.008 0.992 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.975 12.274 -14.296 18.945 hybrid contribution 0.085 -1.040 0.268 1.077 sum -1.890 11.234 -14.028 18.071 Atomic orbital electron populations 1.23193 0.77494 1.04630 1.01078 1.86075 1.21609 1.24861 1.94355 1.18826 1.01731 0.87933 0.91770 1.18378 1.03790 0.94091 0.80064 1.91445 1.91505 1.83718 1.45740 1.21413 1.00189 0.92886 1.01777 1.21449 0.97488 1.01078 0.89988 1.21429 0.97801 0.93569 1.00574 1.20323 0.98725 0.95099 0.93818 1.20518 0.98911 0.98261 0.93064 1.21333 0.97161 0.96711 0.97021 1.18999 0.95153 0.94322 0.92552 1.21696 1.06331 1.23697 1.06600 0.92721 1.25945 0.98367 0.98970 0.96338 1.70082 1.30636 1.42773 1.13733 0.85476 0.78997 0.78352 0.78409 1.19428 1.20535 1.19175 0.92944 0.92665 0.87390 0.81684 0.80714 0.82956 0.91984 0.89889 0.92930 0.94435 0.98336 0.99204 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.80 113.37 1.22 2.00 16 2 O -0.35 -12.14 9.56 -93.08 -0.89 -13.03 16 3 C 0.04 1.32 5.70 22.53 0.13 1.45 16 4 C 0.06 1.56 7.31 22.45 0.16 1.73 16 5 F -0.15 -4.26 17.11 44.97 0.77 -3.49 16 6 C -0.14 -2.90 10.02 22.29 0.22 -2.67 16 7 C -0.08 -1.45 10.04 22.28 0.22 -1.22 16 8 C -0.12 -2.64 9.67 22.26 0.22 -2.43 16 9 C -0.08 -2.38 5.15 -19.78 -0.10 -2.48 16 10 C -0.07 -2.46 5.07 29.85 0.15 -2.31 16 11 C -0.08 -3.70 5.14 30.60 0.16 -3.54 16 12 C 0.03 1.46 4.97 29.85 0.15 1.60 16 13 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 14 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 17 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H 0.05 1.31 7.17 -2.39 -0.02 1.30 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 25 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 26 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 27 H 0.06 2.23 6.42 -2.39 -0.02 2.22 16 28 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -69.84 289.97 6.51 -63.33 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.09 Total: 2.40 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.23 Total: -39.29 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.89 Total: -13.03 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.77 Total: -3.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.84 6.51 -63.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.362 kcal (2) G-P(sol) polarization free energy of solvation -69.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds