Wall clock time and date at job start Sun Mar 29 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 H 1.09001 * 109.46643 * 185.17694 * 3 2 1 5 5 C 1.50697 * 109.46968 * 305.17675 * 3 2 1 6 6 H 1.08006 * 119.99685 * 119.99995 * 5 3 2 7 7 C 1.37870 * 120.00094 * 299.99912 * 5 3 2 8 8 N 1.31526 * 119.99853 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00251 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46910 * 89.99996 * 9 7 5 11 11 H 1.48501 * 109.47300 * 210.00045 * 9 7 5 12 12 H 1.48498 * 109.46764 * 329.99869 * 9 7 5 13 13 N 1.46905 * 109.46810 * 65.17834 * 3 2 1 14 14 C 1.46903 * 110.99626 * 85.90425 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.82086 * 14 13 3 16 16 C 1.38107 * 119.60849 * 95.00020 * 15 14 13 17 17 C 1.38911 * 119.13065 * 180.02562 * 16 15 14 18 18 F 1.35099 * 120.81935 * 179.97438 * 17 16 15 19 19 C 1.38958 * 118.36722 * 359.97438 * 17 16 15 20 20 C 1.38069 * 119.13017 * 0.02562 * 19 17 16 21 21 N 1.31908 * 119.59955 * 274.72581 * 15 14 13 22 22 H 1.08992 * 109.47066 * 54.85478 * 1 2 3 23 23 H 1.09000 * 109.46848 * 294.85398 * 1 2 3 24 24 H 1.09008 * 109.47279 * 174.85429 * 1 2 3 25 25 H 1.09006 * 109.47075 * 120.00226 * 2 1 3 26 26 H 1.08999 * 109.46880 * 239.99692 * 2 1 3 27 27 H 0.96998 * 119.99594 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99976 * 321.94796 * 13 3 2 29 29 H 1.08994 * 109.46864 * 294.81251 * 14 13 3 30 30 H 1.08994 * 109.47486 * 54.81938 * 14 13 3 31 31 H 1.07998 * 120.43105 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.43801 * 179.97438 * 19 17 16 33 33 H 1.08005 * 119.60350 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0927 5 6 1.4357 2.1889 -1.1613 6 1 0.8266 3.0628 -0.9834 7 6 1.6605 1.7562 -2.4509 8 7 1.1335 2.4079 -3.4645 9 14 2.7134 0.2442 -2.7587 10 1 1.8520 -0.9654 -2.7675 11 1 3.3962 0.3752 -4.0709 12 1 3.7290 0.1209 -1.6823 13 7 1.6550 2.0979 1.2571 14 6 2.6440 1.8364 2.3114 15 6 2.2842 2.6249 3.5443 16 6 1.5436 2.0267 4.5449 17 6 1.2171 2.7628 5.6767 18 9 0.4938 2.2119 6.6759 19 6 1.6528 4.0800 5.7560 20 6 2.3894 4.6081 4.7145 21 7 2.6850 3.8765 3.6572 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3633 0.4319 0.9325 24 1 -0.3634 -1.0236 -0.0922 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.2919 2.1037 -4.3718 28 1 0.7325 1.8101 1.5472 29 1 2.6489 0.7727 2.5491 30 1 3.6329 2.1357 1.9644 31 1 1.2226 1.0000 4.4485 32 1 1.4176 4.6830 6.6206 33 1 2.7316 5.6311 4.7679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:40 Heat of formation + Delta-G solvation = -5.517553 kcal Electronic energy + Delta-G solvation = -16545.104271 eV Core-core repulsion = 13713.494928 eV Total energy + Delta-G solvation = -2831.609344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.17587 -40.09583 -36.90488 -33.34674 -31.94685 -31.75077 -30.31413 -27.18804 -25.10579 -23.67797 -23.21431 -21.79796 -19.59546 -17.67136 -17.33298 -16.36601 -15.97926 -15.91522 -15.20687 -14.90564 -14.52509 -14.05159 -13.82592 -13.34102 -13.20494 -13.09128 -12.62842 -12.31294 -12.01202 -11.54301 -11.03616 -10.78570 -10.57680 -10.46531 -9.90206 -9.61419 -9.54349 -9.42450 -9.18188 -9.12659 -8.52864 -7.48137 -6.03050 -3.99032 0.93307 1.01547 3.26350 3.35367 3.38795 3.62295 3.87085 4.26537 4.41419 4.53351 4.77175 4.96857 5.20363 5.27432 5.42456 5.57200 5.64153 5.73894 5.86897 5.94478 5.97639 6.07764 6.17754 6.50410 6.56770 6.74394 6.77595 6.96215 7.26173 7.69377 7.85204 8.00124 8.24873 8.69558 9.09043 9.59219 11.10372 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.005645 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.029437 B = 4959.202827 C = 5233.756069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.160 4.160 3 C 0.187 3.813 4 H 0.036 0.964 5 C -0.489 4.489 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.661 5.661 14 C 0.101 3.899 15 C 0.180 3.820 16 C -0.207 4.207 17 C 0.141 3.859 18 F -0.132 7.132 19 C -0.220 4.220 20 C 0.132 3.868 21 N -0.467 5.467 22 H 0.082 0.918 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -1.338 17.068 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.078 3.922 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.195 1.195 13 N -0.292 5.292 14 C -0.029 4.029 15 C 0.041 3.959 16 C -0.229 4.229 17 C 0.114 3.886 18 F -0.111 7.111 19 C -0.241 4.241 20 C -0.026 4.026 21 N -0.177 5.177 22 H 0.101 0.899 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.243 -0.379 16.044 16.205 hybrid contribution -0.370 -2.322 0.890 2.515 sum 1.873 -2.702 16.935 17.251 Atomic orbital electron populations 1.21657 0.95738 0.99675 1.02505 1.22526 0.97338 1.00996 0.99059 1.19744 0.96239 0.88159 0.88012 0.94585 1.20865 1.31198 1.12718 0.87981 0.89984 1.24885 0.95536 0.96621 0.96129 1.69883 1.45007 1.40215 0.98811 0.86975 0.81154 0.83849 0.76942 1.20659 1.22415 1.19486 1.60590 1.03468 1.62900 1.02235 1.20911 0.99018 0.94555 0.88460 1.21331 0.90310 0.90152 0.94057 1.22074 1.03641 1.02686 0.94457 1.17955 0.92588 0.92244 0.85825 1.91526 1.74901 1.85653 1.58983 1.22163 1.03999 0.94768 1.03163 1.22775 0.92433 0.99829 0.87555 1.67646 1.20831 1.05985 1.23250 0.89927 0.94147 0.95027 0.94835 0.93135 0.92713 0.84910 0.94284 0.89088 0.83817 0.83860 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.40 37.16 0.35 -2.34 16 2 C -0.16 -3.30 5.22 -26.73 -0.14 -3.44 16 3 C 0.19 4.26 1.93 -68.86 -0.13 4.13 16 4 H 0.04 0.86 6.76 -51.93 -0.35 0.51 16 5 C -0.49 -13.40 7.83 -34.44 -0.27 -13.67 16 6 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 7 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.88 21.54 24.32 -169.99 -4.13 17.41 16 10 H -0.28 -6.67 6.92 56.52 0.39 -6.28 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.66 -13.21 6.19 -109.22 -0.68 -13.88 16 14 C 0.10 1.67 5.82 -4.97 -0.03 1.64 16 15 C 0.18 2.73 6.34 -82.61 -0.52 2.21 16 16 C -0.21 -2.71 9.72 -39.38 -0.38 -3.09 16 17 C 0.14 1.73 7.40 -39.07 -0.29 1.44 16 18 F -0.13 -1.60 17.30 2.25 0.04 -1.56 16 19 C -0.22 -2.37 10.11 -39.38 -0.40 -2.77 16 20 C 0.13 1.57 11.18 -17.57 -0.20 1.37 16 21 N -0.47 -7.27 10.27 -9.51 -0.10 -7.37 16 22 H 0.08 1.86 6.85 -51.93 -0.36 1.50 16 23 H 0.04 0.70 6.63 -51.93 -0.34 0.35 16 24 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 26 H 0.05 1.12 3.42 -51.93 -0.18 0.94 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.33 6.28 6.69 -39.29 -0.26 6.01 16 29 H 0.04 0.57 7.43 -51.93 -0.39 0.19 16 30 H 0.09 1.57 7.92 -51.93 -0.41 1.16 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -30.37 274.86 -6.03 -36.40 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.97 Total: 3.99 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.11 Total: -12.67 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.00 Total: -47.71 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.13 Total: 17.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.37 -6.03 -36.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.883 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds