Wall clock time and date at job start Sun Mar 29 2020 21:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09003 * 109.46992 * 305.84370 * 3 2 1 5 5 C 1.50703 * 109.47135 * 185.84599 * 3 2 1 6 6 H 1.08004 * 120.00320 * 243.40518 * 5 3 2 7 7 C 1.37879 * 120.00182 * 63.39926 * 5 3 2 8 8 N 1.31513 * 120.00493 * 196.04629 * 7 5 3 9 9 Si 1.86801 * 119.99649 * 16.04622 * 7 5 3 10 10 H 1.48499 * 109.47290 * 92.75600 * 9 7 5 11 11 H 1.48509 * 109.47058 * 212.75485 * 9 7 5 12 12 H 1.48499 * 109.47363 * 332.75076 * 9 7 5 13 13 N 1.46899 * 109.47458 * 65.84792 * 3 2 1 14 14 C 1.46902 * 110.99856 * 258.58354 * 13 3 2 15 15 C 1.50699 * 109.47165 * 175.30844 * 14 13 3 16 16 C 1.38113 * 119.60350 * 94.99811 * 15 14 13 17 17 C 1.38916 * 119.12849 * 180.02562 * 16 15 14 18 18 F 1.35096 * 120.81748 * 179.97438 * 17 16 15 19 19 C 1.38964 * 118.36655 * 359.97438 * 17 16 15 20 20 C 1.38070 * 119.12841 * 359.97438 * 19 17 16 21 21 N 1.31899 * 119.60484 * 274.72500 * 15 14 13 22 22 H 1.09004 * 109.46779 * 55.84384 * 1 2 3 23 23 H 1.08997 * 109.47344 * 175.84457 * 1 2 3 24 24 H 1.09001 * 109.47116 * 295.84880 * 1 2 3 25 25 H 1.08997 * 109.47574 * 239.99463 * 2 1 3 26 26 H 1.08999 * 109.47231 * 119.99533 * 2 1 3 27 27 H 0.96997 * 119.99969 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00267 * 134.62727 * 13 3 2 29 29 H 1.09005 * 109.47228 * 55.30586 * 14 13 3 30 30 H 1.09001 * 109.46950 * 295.30663 * 14 13 3 31 31 H 1.08004 * 120.43367 * 0.02562 * 16 15 14 32 32 H 1.07996 * 120.43385 * 179.97438 * 19 17 16 33 33 H 1.08000 * 119.60181 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 -0.8331 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8359 0.6496 7 6 4.1229 0.9480 -1.2912 8 7 5.4049 0.6547 -1.3032 9 14 3.0916 0.6913 -2.8274 10 1 3.1667 1.9031 -3.6823 11 1 3.6090 -0.4791 -3.5811 12 1 1.6792 0.4454 -2.4401 13 7 1.6690 2.0931 1.2637 14 6 0.4998 2.9641 1.0839 15 6 0.0793 3.5224 2.4190 16 6 0.5349 4.7653 2.8129 17 6 0.1415 5.2702 4.0459 18 9 0.5672 6.4818 4.4653 19 6 -0.7007 4.4983 4.8371 20 6 -1.1149 3.2654 4.3739 21 7 -0.7239 2.8206 3.1950 22 1 -0.3633 0.5770 -0.8504 23 1 -0.3634 -1.0249 -0.0745 24 1 -0.3633 0.4481 0.9248 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8149 0.3054 -2.1099 28 1 2.4475 2.6075 1.6478 29 1 -0.3206 2.3875 0.6565 30 1 0.7568 3.7832 0.4123 31 1 1.1885 5.3371 2.1708 32 1 -1.0269 4.8582 5.8017 33 1 -1.7691 2.6590 4.9827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:44 Heat of formation + Delta-G solvation = -11.885445 kcal Electronic energy + Delta-G solvation = -16524.042037 eV Core-core repulsion = 13692.156560 eV Total energy + Delta-G solvation = -2831.885476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.14490 -40.08195 -36.59835 -33.18409 -31.93312 -31.88495 -30.45332 -27.68589 -24.95465 -23.66450 -22.48858 -21.61593 -19.66967 -17.70473 -17.34111 -16.75071 -15.94967 -15.88504 -15.33686 -14.61991 -14.32184 -13.89865 -13.73304 -13.58302 -13.20024 -12.82055 -12.49925 -12.18756 -11.75205 -11.47612 -11.37719 -10.81721 -10.70874 -10.31305 -9.84498 -9.61486 -9.54396 -9.37967 -9.17789 -9.12454 -8.46292 -7.51889 -6.16505 -4.12127 0.94720 1.02891 3.25579 3.35809 3.39353 3.63135 3.89613 4.27436 4.38139 4.55284 4.79729 4.99424 5.13315 5.30692 5.45205 5.59771 5.71244 5.76893 6.01829 6.08367 6.12315 6.15303 6.32802 6.58336 6.66834 6.82539 7.03482 7.08630 7.43709 7.62057 7.90511 7.99449 8.27561 8.54874 8.91441 9.49251 10.96229 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034538 B = 0.005880 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.498598 B = 4761.053101 C = 5227.527123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C 0.194 3.806 4 H 0.006 0.994 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.669 5.669 14 C 0.099 3.901 15 C 0.179 3.821 16 C -0.205 4.205 17 C 0.142 3.858 18 F -0.132 7.132 19 C -0.220 4.220 20 C 0.129 3.871 21 N -0.471 5.471 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.264 0.736 28 H 0.340 0.660 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 6.967 8.283 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.086 3.914 4 H 0.023 0.977 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.173 1.173 13 N -0.301 5.301 14 C -0.031 4.031 15 C 0.041 3.959 16 C -0.226 4.226 17 C 0.114 3.886 18 F -0.110 7.110 19 C -0.241 4.241 20 C -0.028 4.028 21 N -0.181 5.181 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.158 0.842 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.324 5.582 8.102 16.563 hybrid contribution 0.476 1.704 -0.905 1.987 sum -12.848 7.286 7.197 16.430 Atomic orbital electron populations 1.21902 0.98444 0.99556 1.00959 1.21838 0.92883 0.99069 1.00791 1.19478 0.95514 0.90939 0.85514 0.97657 1.21208 0.89368 1.42815 1.04045 0.90649 1.24888 0.94766 0.93934 0.98810 1.69989 1.11734 1.42347 1.28423 0.87201 0.82463 0.77858 0.83545 1.20820 1.21259 1.17282 1.60525 1.07026 1.32432 1.30111 1.21044 0.96892 0.96043 0.89129 1.21363 0.89942 0.88532 0.96045 1.22129 1.04614 0.99099 0.96744 1.17971 0.95535 0.81344 0.93701 1.91528 1.88094 1.41409 1.89978 1.22148 1.02147 0.97521 1.02321 1.22732 0.95821 0.92163 0.92087 1.67615 1.11492 1.34340 1.04627 0.94534 0.94688 0.91920 0.93234 0.92224 0.92591 0.84219 0.89015 0.93952 0.83591 0.83920 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.74 37.16 0.32 -2.49 16 2 C -0.11 -2.37 4.85 -26.73 -0.13 -2.50 16 3 C 0.19 4.44 1.75 -68.86 -0.12 4.32 16 4 H 0.01 0.13 6.35 -51.93 -0.33 -0.20 16 5 C -0.54 -14.56 9.03 -34.44 -0.31 -14.87 16 6 H 0.08 2.21 7.67 -52.48 -0.40 1.81 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.14 16 8 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.86 20.77 25.76 -169.99 -4.38 16.39 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.25 -5.65 5.49 56.52 0.31 -5.34 16 13 N -0.67 -13.35 6.07 -109.21 -0.66 -14.01 16 14 C 0.10 1.65 5.34 -4.98 -0.03 1.62 16 15 C 0.18 2.71 6.33 -82.61 -0.52 2.19 16 16 C -0.20 -2.77 9.72 -39.38 -0.38 -3.15 16 17 C 0.14 1.78 7.40 -39.06 -0.29 1.49 16 18 F -0.13 -1.65 17.30 2.25 0.04 -1.61 16 19 C -0.22 -2.37 10.11 -39.37 -0.40 -2.77 16 20 C 0.13 1.49 11.18 -17.57 -0.20 1.30 16 21 N -0.47 -7.03 10.27 -9.51 -0.10 -7.13 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.15 6.66 -51.93 -0.35 0.80 16 25 H 0.05 1.14 4.88 -51.93 -0.25 0.89 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.34 6.88 7.96 -39.29 -0.31 6.57 16 29 H 0.09 1.55 6.01 -51.93 -0.31 1.23 16 30 H 0.04 0.67 8.04 -51.93 -0.42 0.25 16 31 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 277.29 15.07 4.18 4.18 Total: -1.00 -29.75 277.29 -6.43 -36.18 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -4.14 Total: 4.53 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.15 Total: -12.73 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.01 Total: -46.94 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.38 Total: 16.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.75 -6.43 -36.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.295 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds