Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09003 * 109.46992 * 305.84370 * 3 2 1 5 5 C 1.50703 * 109.47135 * 185.84599 * 3 2 1 6 6 H 1.08004 * 120.00320 * 243.40518 * 5 3 2 7 7 C 1.37879 * 120.00182 * 63.39926 * 5 3 2 8 8 N 1.31513 * 120.00493 * 196.04629 * 7 5 3 9 9 Si 1.86801 * 119.99649 * 16.04622 * 7 5 3 10 10 H 1.48499 * 109.47290 * 92.75600 * 9 7 5 11 11 H 1.48509 * 109.47058 * 212.75485 * 9 7 5 12 12 H 1.48499 * 109.47363 * 332.75076 * 9 7 5 13 13 N 1.46899 * 109.47458 * 65.84792 * 3 2 1 14 14 C 1.46902 * 110.99856 * 258.58354 * 13 3 2 15 15 C 1.50699 * 109.47165 * 175.30844 * 14 13 3 16 16 C 1.38113 * 119.60350 * 94.99811 * 15 14 13 17 17 C 1.38916 * 119.12849 * 180.02562 * 16 15 14 18 18 F 1.35096 * 120.81748 * 179.97438 * 17 16 15 19 19 C 1.38964 * 118.36655 * 359.97438 * 17 16 15 20 20 C 1.38070 * 119.12841 * 359.97438 * 19 17 16 21 21 N 1.31899 * 119.60484 * 274.72500 * 15 14 13 22 22 H 1.09004 * 109.46779 * 55.84384 * 1 2 3 23 23 H 1.08997 * 109.47344 * 175.84457 * 1 2 3 24 24 H 1.09001 * 109.47116 * 295.84880 * 1 2 3 25 25 H 1.08997 * 109.47574 * 239.99463 * 2 1 3 26 26 H 1.08999 * 109.47231 * 119.99533 * 2 1 3 27 27 H 0.96997 * 119.99969 * 180.02562 * 8 7 5 28 28 H 1.00900 * 111.00267 * 134.62727 * 13 3 2 29 29 H 1.09005 * 109.47228 * 55.30586 * 14 13 3 30 30 H 1.09001 * 109.46950 * 295.30663 * 14 13 3 31 31 H 1.08004 * 120.43367 * 0.02562 * 16 15 14 32 32 H 1.07996 * 120.43385 * 179.97438 * 19 17 16 33 33 H 1.08000 * 119.60181 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9856 -0.8331 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8359 0.6496 7 6 4.1229 0.9480 -1.2912 8 7 5.4049 0.6547 -1.3032 9 14 3.0916 0.6913 -2.8274 10 1 3.1667 1.9031 -3.6823 11 1 3.6090 -0.4791 -3.5811 12 1 1.6792 0.4454 -2.4401 13 7 1.6690 2.0931 1.2637 14 6 0.4998 2.9641 1.0839 15 6 0.0793 3.5224 2.4190 16 6 0.5349 4.7653 2.8129 17 6 0.1415 5.2702 4.0459 18 9 0.5672 6.4818 4.4653 19 6 -0.7007 4.4983 4.8371 20 6 -1.1149 3.2654 4.3739 21 7 -0.7239 2.8206 3.1950 22 1 -0.3633 0.5770 -0.8504 23 1 -0.3634 -1.0249 -0.0745 24 1 -0.3633 0.4481 0.9248 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.8149 0.3054 -2.1099 28 1 2.4475 2.6075 1.6478 29 1 -0.3206 2.3875 0.6565 30 1 0.7568 3.7832 0.4123 31 1 1.1885 5.3371 2.1708 32 1 -1.0269 4.8582 5.8017 33 1 -1.7691 2.6590 4.9827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = -32.489265 kcal Electronic energy + Delta-G solvation = -16524.935485 eV Core-core repulsion = 13692.156560 eV Total energy + Delta-G solvation = -2832.778925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.11243 -41.09929 -38.24586 -34.81815 -33.67745 -32.92028 -31.79514 -29.37869 -26.43741 -24.62669 -24.21539 -22.79204 -21.44635 -19.23341 -18.39547 -18.23500 -17.14916 -16.85891 -16.85455 -15.92595 -15.71645 -15.38691 -15.00575 -14.74725 -14.66780 -14.45365 -13.87807 -13.79352 -13.36978 -12.98378 -12.71446 -12.64835 -12.41756 -11.93094 -11.66638 -11.21712 -11.09414 -10.64086 -10.56117 -10.51726 -10.16420 -9.12220 -8.32884 -6.32633 -0.03126 0.05488 1.35045 1.39223 1.49787 2.35400 2.61436 2.92815 3.01897 3.25644 3.57885 3.79061 3.92125 4.03968 4.41383 4.45892 4.52735 4.58671 4.66462 4.70130 4.79149 4.86543 4.92233 5.01145 5.24124 5.30172 5.45610 5.56476 5.63729 5.81668 5.99723 6.45145 6.63056 6.82812 7.00347 7.32940 8.83499 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.034538 B = 0.005880 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.498598 B = 4761.053101 C = 5227.527123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.200 3.800 4 H 0.010 0.990 5 C -0.540 4.540 6 H 0.036 0.964 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.224 1.224 13 N -0.672 5.672 14 C 0.102 3.898 15 C 0.160 3.840 16 C -0.211 4.211 17 C 0.131 3.869 18 F -0.133 7.133 19 C -0.202 4.202 20 C 0.127 3.873 21 N -0.497 5.497 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.334 0.666 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.586 7.246 8.780 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C 0.091 3.909 4 H 0.027 0.973 5 C -0.578 4.578 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.146 1.146 13 N -0.303 5.303 14 C -0.028 4.028 15 C 0.023 3.977 16 C -0.233 4.233 17 C 0.104 3.896 18 F -0.111 7.111 19 C -0.222 4.222 20 C -0.030 4.030 21 N -0.207 5.207 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.167 0.833 32 H 0.195 0.805 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.090 5.874 8.614 19.173 hybrid contribution 1.347 1.679 -0.885 2.327 sum -14.744 7.553 7.728 18.280 Atomic orbital electron populations 1.21778 0.95311 1.01119 1.01535 1.21765 0.95625 0.97781 0.99510 1.19329 0.92481 0.92118 0.86992 0.97256 1.21522 0.91691 1.41691 1.02889 0.94538 1.25752 0.95846 0.93816 1.02155 1.70124 1.13897 1.44308 1.29439 0.86181 0.81976 0.77750 0.79113 1.20284 1.21309 1.14647 1.60473 1.07759 1.33603 1.28455 1.21006 0.95275 0.95707 0.90782 1.21037 0.91521 0.89314 0.95820 1.22157 1.04748 0.98820 0.97542 1.18129 0.96118 0.81600 0.93748 1.91528 1.88205 1.41498 1.89898 1.22520 1.00116 0.96569 1.03044 1.23337 0.95648 0.92779 0.91200 1.67554 1.11977 1.35134 1.06035 0.93544 0.92702 0.91687 0.94300 0.93834 0.92511 0.84905 0.88929 0.93280 0.83276 0.80454 0.78395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.74 71.98 0.63 -4.21 16 2 C -0.11 -4.65 4.85 30.59 0.15 -4.50 16 3 C 0.20 9.08 1.75 44.17 0.08 9.16 16 4 H 0.01 0.44 6.35 -2.39 -0.02 0.42 16 5 C -0.54 -30.10 9.03 25.60 0.23 -29.86 16 6 H 0.04 2.26 7.67 -2.91 -0.02 2.23 16 7 C 0.02 1.33 5.31 84.66 0.45 1.78 16 8 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 9 Si 0.93 42.74 25.76 68.60 1.77 44.51 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.22 -9.34 5.49 99.48 0.55 -8.80 16 13 N -0.67 -26.80 6.07 -499.45 -3.03 -29.83 16 14 C 0.10 3.31 5.34 85.56 0.46 3.76 16 15 C 0.16 4.68 6.33 42.52 0.27 4.95 16 16 C -0.21 -5.51 9.72 22.40 0.22 -5.29 16 17 C 0.13 3.03 7.40 22.61 0.17 3.20 16 18 F -0.13 -3.09 17.30 44.97 0.78 -2.31 16 19 C -0.20 -3.67 10.11 22.40 0.23 -3.44 16 20 C 0.13 2.54 11.18 84.64 0.95 3.49 16 21 N -0.50 -13.86 10.27 -184.01 -1.89 -15.75 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 2.22 6.66 -2.39 -0.02 2.20 16 25 H 0.04 1.73 4.88 -2.39 -0.01 1.72 16 26 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.33 13.89 7.96 -89.69 -0.71 13.18 16 29 H 0.09 2.97 6.01 -2.38 -0.01 2.96 16 30 H 0.05 1.51 8.04 -2.39 -0.02 1.49 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -65.24 277.29 1.99 -63.25 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.25 Total: 18.71 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 3.82 Total: -20.97 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -4.62 Total: -103.17 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.77 Total: 44.51 kcal Total: -65.24 1.99 -63.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.759 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds