Wall clock time and date at job start Sun Mar 29 2020 23:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48496 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46986 * 299.99690 * 3 2 1 6 6 H 1.48501 * 109.47299 * 59.99770 * 3 2 1 7 7 C 1.37873 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00169 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46976 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47158 * 179.97438 * 15 14 13 17 17 C 1.48221 * 111.00247 * 170.00122 * 16 15 14 18 18 C 1.51125 * 105.44007 * 144.85390 * 17 16 15 19 19 C 1.31118 * 109.36885 * 343.14410 * 18 17 16 20 20 C 1.48226 * 110.99914 * 283.64385 * 16 15 14 21 21 H 0.96998 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00729 * 9 7 2 23 23 H 1.08997 * 109.47396 * 300.00378 * 9 7 2 24 24 H 1.09005 * 109.47066 * 60.00498 * 10 9 7 25 25 H 1.08997 * 109.47214 * 300.00321 * 10 9 7 26 26 H 0.97004 * 120.00101 * 359.97438 * 13 11 10 27 27 H 1.08997 * 109.46873 * 59.99649 * 14 13 11 28 28 H 1.08997 * 109.47188 * 299.99945 * 14 13 11 29 29 H 1.09005 * 109.47080 * 60.00449 * 15 14 13 30 30 H 1.08997 * 109.47390 * 300.00155 * 15 14 13 31 31 H 1.09002 * 110.26794 * 263.87454 * 17 16 15 32 32 H 1.09003 * 110.26777 * 25.83869 * 17 16 15 33 33 H 1.07997 * 125.26823 * 163.07536 * 18 17 16 34 34 H 1.07997 * 125.24482 * 179.97438 * 19 18 17 35 35 H 1.09000 * 110.27046 * 334.06789 * 20 16 15 36 36 H 1.09002 * 110.27137 * 96.03479 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4920 -4.9671 0.0033 12 8 0.2792 -4.9672 0.0033 13 7 2.1659 -6.1343 0.0047 14 6 1.4335 -7.4031 0.0058 15 6 2.4278 -8.5659 0.0067 16 7 1.6934 -9.8382 0.0084 17 6 2.6080 -10.9798 -0.2309 18 6 2.0626 -12.1144 0.6053 19 6 1.2336 -11.6350 1.5010 20 6 1.1457 -10.1336 1.3537 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8721 -3.6035 0.8928 25 1 2.8722 -3.6050 -0.8872 26 1 3.1360 -6.1343 0.0051 27 1 0.8071 -7.4618 -0.8843 28 1 0.8065 -7.4600 0.8956 29 1 3.0545 -8.5074 0.8967 30 1 3.0544 -8.5089 -0.8833 31 1 2.6034 -11.2525 -1.2863 32 1 3.6190 -10.7272 0.0888 33 1 2.3159 -13.1570 0.4828 34 1 0.6980 -12.2225 2.2319 35 1 1.7445 -9.6432 2.1213 36 1 0.1079 -9.8066 1.4191 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261212890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:40 Heat of formation + Delta-G solvation = -15.164846 kcal Electronic energy + Delta-G solvation = -16076.748402 eV Core-core repulsion = 13368.181026 eV Total energy + Delta-G solvation = -2708.567377 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85962 -38.95135 -35.11210 -33.42059 -32.53052 -30.94106 -28.80723 -28.07194 -25.54482 -23.26465 -21.50213 -21.33566 -19.67226 -19.55428 -16.96166 -16.67239 -15.96133 -15.54199 -15.42712 -15.08301 -14.39625 -14.27014 -13.71088 -13.27191 -12.91038 -12.78912 -12.58470 -12.22977 -12.12253 -11.72397 -11.60870 -11.22738 -11.13015 -10.92664 -10.56460 -9.93640 -9.86909 -9.64200 -9.15452 -8.98723 -8.75264 -8.64701 -8.30415 -5.94328 -3.98676 1.80022 3.25763 3.29939 3.33740 3.40793 3.44132 3.98521 4.33736 4.36940 4.49422 4.80257 4.80746 5.11331 5.14665 5.19642 5.25228 5.30514 5.40571 5.57282 5.61264 5.82004 5.99800 6.02225 6.21826 6.25723 6.27044 6.52806 6.56581 6.78397 6.92079 7.76816 7.89033 7.91100 8.09609 8.40865 8.81900 9.10391 9.64800 11.16695 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082963 B = 0.003282 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.418824 B = 8528.656030 C = 8702.986030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.533 6.533 13 N -0.746 5.746 14 C 0.125 3.875 15 C 0.034 3.966 16 N -0.501 5.501 17 C 0.053 3.947 18 C -0.173 4.173 19 C -0.165 4.165 20 C 0.047 3.953 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.396 0.604 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.061 0.939 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.768 -22.822 1.708 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.401 5.401 14 C 0.001 3.999 15 C -0.094 4.094 16 N -0.225 5.225 17 C -0.075 4.075 18 C -0.191 4.191 19 C -0.184 4.184 20 C -0.080 4.080 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.229 0.771 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.078 0.922 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.285 -22.612 1.276 23.504 hybrid contribution 1.566 0.756 0.649 1.856 sum 7.851 -21.856 1.926 23.303 Atomic orbital electron populations 1.70010 1.06052 1.26458 1.50314 1.25035 0.94828 0.99245 0.95351 0.86535 0.79986 0.83854 0.77574 1.19767 1.21015 1.21035 1.21263 0.92956 0.91022 1.51205 0.92562 1.18909 0.93205 0.89389 0.98654 1.21863 1.00701 0.91920 1.02453 1.21554 0.88661 0.85550 0.74439 1.90677 1.14486 1.87608 1.48050 1.46137 1.09977 1.05642 1.78309 1.21061 0.94203 0.81757 1.02891 1.22537 0.95673 0.89446 1.01790 1.65498 1.29598 1.01233 1.26147 1.22068 0.95055 0.89428 1.00908 1.23597 0.98884 0.99103 0.97548 1.23653 0.99227 0.95961 0.99526 1.22208 1.02055 0.93665 0.90074 0.93007 0.95778 0.95829 0.90286 0.90234 0.77098 0.90896 0.91927 0.93616 0.89877 0.89382 0.92427 0.84664 0.84672 0.92155 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 11 C 0.51 10.03 7.83 -10.99 -0.09 9.94 16 12 O -0.53 -12.98 15.98 5.55 0.09 -12.89 16 13 N -0.75 -10.60 5.56 -60.29 -0.33 -10.94 16 14 C 0.13 1.64 5.81 -4.04 -0.02 1.62 16 15 C 0.03 0.33 4.77 -3.82 -0.02 0.31 16 16 N -0.50 -5.03 5.52 -234.68 -1.29 -6.33 16 17 C 0.05 0.43 6.62 -4.04 -0.03 0.40 16 18 C -0.17 -1.28 10.96 -35.85 -0.39 -1.67 16 19 C -0.17 -1.29 10.95 -35.85 -0.39 -1.69 16 20 C 0.05 0.44 6.08 -4.04 -0.02 0.41 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.40 4.28 8.47 -40.82 -0.35 3.93 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.89 7.76 -51.93 -0.40 0.49 16 29 H 0.05 0.40 7.64 -51.93 -0.40 0.01 16 30 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.06 0.54 7.48 -51.93 -0.39 0.15 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -34.60 304.98 -8.58 -43.18 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.70 Total: -1.00 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.65 Total: -6.43 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.89 Total: -44.24 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.60 -8.58 -43.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.011 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds