Wall clock time and date at job start Sun Mar 29 2020 23:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48496 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46986 * 299.99690 * 3 2 1 6 6 H 1.48501 * 109.47299 * 59.99770 * 3 2 1 7 7 C 1.37873 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00169 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46976 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47158 * 179.97438 * 15 14 13 17 17 C 1.48221 * 111.00247 * 170.00122 * 16 15 14 18 18 C 1.51125 * 105.44007 * 144.85390 * 17 16 15 19 19 C 1.31118 * 109.36885 * 343.14410 * 18 17 16 20 20 C 1.48226 * 110.99914 * 283.64385 * 16 15 14 21 21 H 0.96998 * 120.00284 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47265 * 60.00729 * 9 7 2 23 23 H 1.08997 * 109.47396 * 300.00378 * 9 7 2 24 24 H 1.09005 * 109.47066 * 60.00498 * 10 9 7 25 25 H 1.08997 * 109.47214 * 300.00321 * 10 9 7 26 26 H 0.97004 * 120.00101 * 359.97438 * 13 11 10 27 27 H 1.08997 * 109.46873 * 59.99649 * 14 13 11 28 28 H 1.08997 * 109.47188 * 299.99945 * 14 13 11 29 29 H 1.09005 * 109.47080 * 60.00449 * 15 14 13 30 30 H 1.08997 * 109.47390 * 300.00155 * 15 14 13 31 31 H 1.09002 * 110.26794 * 263.87454 * 17 16 15 32 32 H 1.09003 * 110.26777 * 25.83869 * 17 16 15 33 33 H 1.07997 * 125.26823 * 163.07536 * 18 17 16 34 34 H 1.07997 * 125.24482 * 179.97438 * 19 18 17 35 35 H 1.09000 * 110.27046 * 334.06789 * 20 16 15 36 36 H 1.09002 * 110.27137 * 96.03479 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4920 -4.9671 0.0033 12 8 0.2792 -4.9672 0.0033 13 7 2.1659 -6.1343 0.0047 14 6 1.4335 -7.4031 0.0058 15 6 2.4278 -8.5659 0.0067 16 7 1.6934 -9.8382 0.0084 17 6 2.6080 -10.9798 -0.2309 18 6 2.0626 -12.1144 0.6053 19 6 1.2336 -11.6350 1.5010 20 6 1.1457 -10.1336 1.3537 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8721 -3.6035 0.8928 25 1 2.8722 -3.6050 -0.8872 26 1 3.1360 -6.1343 0.0051 27 1 0.8071 -7.4618 -0.8843 28 1 0.8065 -7.4600 0.8956 29 1 3.0545 -8.5074 0.8967 30 1 3.0544 -8.5089 -0.8833 31 1 2.6034 -11.2525 -1.2863 32 1 3.6190 -10.7272 0.0888 33 1 2.3159 -13.1570 0.4828 34 1 0.6980 -12.2225 2.2319 35 1 1.7445 -9.6432 2.1213 36 1 0.1079 -9.8066 1.4191 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261212890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:40 Heat of formation + Delta-G solvation = -41.605502 kcal Electronic energy + Delta-G solvation = -16077.894955 eV Core-core repulsion = 13368.181026 eV Total energy + Delta-G solvation = -2709.713930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84154 -40.22770 -36.36294 -35.53513 -33.58378 -32.82641 -29.58583 -29.12719 -27.38212 -24.44464 -23.18450 -22.20038 -21.11615 -20.26928 -18.82208 -17.62920 -17.37893 -16.85210 -16.73210 -16.33465 -16.22853 -15.41090 -14.87140 -14.44122 -14.25144 -14.06724 -13.69762 -13.52369 -13.22851 -13.14340 -12.84847 -12.71784 -12.42681 -12.25067 -12.05617 -11.91649 -11.63040 -11.28101 -10.77000 -10.57731 -10.50048 -10.09738 -9.30840 -8.17589 -6.31762 1.24168 1.42735 1.44350 1.57635 1.71199 2.11585 2.44090 3.10951 3.15473 3.65304 3.74063 3.94887 4.03750 4.13805 4.40448 4.45579 4.51190 4.52537 4.56999 4.59129 4.70722 4.81627 4.89992 5.01901 5.10608 5.41826 5.45109 5.51798 5.56881 5.63911 5.86251 5.90011 5.94569 6.18053 6.61068 6.87298 7.34919 7.38822 8.95458 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082963 B = 0.003282 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.418824 B = 8528.656030 C = 8702.986030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.118 4.118 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.717 5.717 14 C 0.128 3.872 15 C 0.047 3.953 16 N -0.522 5.522 17 C 0.049 3.951 18 C -0.169 4.169 19 C -0.178 4.178 20 C 0.043 3.957 21 H 0.263 0.737 22 H -0.019 1.019 23 H -0.019 1.019 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.418 0.582 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.062 0.938 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.881 -23.664 1.722 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.157 4.157 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.371 5.371 14 C 0.003 3.997 15 C -0.082 4.082 16 N -0.247 5.247 17 C -0.078 4.078 18 C -0.187 4.187 19 C -0.197 4.197 20 C -0.085 4.085 21 H 0.071 0.929 22 H 0.000 1.000 23 H 0.000 1.000 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.255 0.745 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.080 0.920 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.476 -23.508 1.291 25.379 hybrid contribution 0.568 0.940 0.631 1.267 sum 10.044 -22.568 1.922 24.776 Atomic orbital electron populations 1.70191 1.08368 1.27749 1.51606 1.26171 0.95739 1.04059 0.94686 0.85249 0.79325 0.77991 0.77517 1.17487 1.20662 1.20669 1.21754 0.94054 0.91544 1.50564 0.90441 1.18711 0.93787 0.92609 0.94667 1.21636 0.99256 0.89804 1.05046 1.21393 0.87805 0.86819 0.74128 1.90664 1.16905 1.88421 1.51108 1.45772 1.11051 1.04558 1.75752 1.21080 0.94956 0.82330 1.01288 1.22399 0.94565 0.87896 1.03322 1.65435 1.30666 1.01927 1.26663 1.22160 0.95273 0.88877 1.01449 1.23851 0.98182 0.99987 0.96699 1.23776 1.00184 0.95102 1.00596 1.22222 1.01279 0.95041 0.89935 0.92871 1.00018 1.00024 0.87526 0.87514 0.74471 0.92876 0.93349 0.92041 0.88218 0.88870 0.91132 0.82456 0.83173 0.92038 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.27 13.29 21.45 0.28 -59.98 16 2 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 3 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 4 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.25 4.26 29.85 0.13 2.38 16 10 C -0.12 -4.73 5.64 29.85 0.17 -4.56 16 11 C 0.51 20.11 7.83 87.66 0.69 20.80 16 12 O -0.59 -30.10 15.98 -3.05 -0.05 -30.15 16 13 N -0.72 -19.33 5.56 -463.05 -2.57 -21.90 16 14 C 0.13 3.28 5.81 86.38 0.50 3.79 16 15 C 0.05 0.81 4.77 86.30 0.41 1.22 16 16 N -0.52 -9.77 5.52 -896.38 -4.95 -14.72 16 17 C 0.05 0.68 6.62 85.44 0.57 1.24 16 18 C -0.17 -2.10 10.96 25.66 0.28 -1.82 16 19 C -0.18 -2.52 10.95 25.66 0.28 -2.24 16 20 C 0.04 0.76 6.08 85.43 0.52 1.28 16 21 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 22 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 23 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 24 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 25 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 26 H 0.42 7.69 8.47 -92.71 -0.79 6.90 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.40 7.76 -2.39 -0.02 1.38 16 29 H 0.06 0.89 7.64 -2.38 -0.02 0.88 16 30 H 0.10 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 0.80 7.79 -2.39 -0.02 0.78 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.06 1.05 7.48 -2.39 -0.02 1.03 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.51 304.98 -0.75 -79.26 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.27 Total: 9.69 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.24 Total: -8.76 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -7.23 Total: -96.60 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -78.51 -0.75 -79.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261212890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -78.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds