Wall clock time and date at job start Sun Mar 29 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00214 * 2 1 4 4 C 1.50699 * 109.47358 * 66.04040 * 3 2 1 5 5 O 1.21287 * 119.99676 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00259 * 180.02562 * 6 4 3 8 8 H 1.07995 * 119.99863 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00342 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99742 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00284 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47252 * 89.99701 * 11 9 7 13 13 H 1.48498 * 109.47449 * 210.00083 * 11 9 7 14 14 H 1.48500 * 109.47004 * 329.99983 * 11 9 7 15 15 C 1.46898 * 111.00519 * 236.04171 * 2 1 3 16 16 C 1.50704 * 109.47256 * 293.95846 * 15 2 1 17 17 C 1.34664 * 126.58651 * 265.03616 * 16 15 2 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 H 0.96997 * 126.40535 * 180.25138 * 20 19 18 22 22 H 1.09007 * 109.46643 * 183.95339 * 1 2 3 23 23 H 1.08999 * 109.47047 * 303.95555 * 1 2 3 24 24 H 1.08999 * 109.47004 * 63.96247 * 1 2 3 25 25 H 1.08999 * 109.47264 * 186.05003 * 3 2 1 26 26 H 1.09009 * 109.46450 * 306.04594 * 3 2 1 27 27 H 0.97006 * 119.99625 * 359.97438 * 6 4 3 28 28 H 0.96994 * 120.00132 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47826 * 173.95184 * 15 2 1 30 30 H 1.09012 * 109.46894 * 53.95223 * 15 2 1 31 31 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 32 32 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1410 6 7 2.0180 3.3202 1.5232 7 6 1.6922 3.9348 2.7046 8 1 1.1299 3.3990 3.4549 9 6 2.0856 5.2472 2.9366 10 7 2.7703 5.8990 2.0238 11 14 1.6411 6.0848 4.5459 12 1 2.7177 5.8482 5.5411 13 1 1.4890 7.5444 4.3188 14 1 0.3631 5.5277 5.0575 15 6 1.9955 -0.7660 -1.1375 16 6 1.6370 -2.2205 -0.9727 17 6 2.4085 -3.1807 -0.4284 18 7 1.7236 -4.3334 -0.4646 19 6 0.5601 -4.1255 -1.0179 20 7 0.4643 -2.8193 -1.3469 21 1 -0.2940 -2.3861 -1.7691 22 1 -0.3633 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9234 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.5234 3.8014 0.8494 28 1 3.0453 6.8149 2.1859 29 1 3.0798 -0.6611 -1.1756 30 1 1.5612 -0.3873 -2.0628 31 1 3.4030 -3.0456 -0.0296 32 1 -0.2019 -4.8733 -1.1813 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261640325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:07 Heat of formation + Delta-G solvation = 34.128393 kcal Electronic energy + Delta-G solvation = -16432.196036 eV Core-core repulsion = 13622.225831 eV Total energy + Delta-G solvation = -2809.970205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01993 -38.60939 -36.41925 -33.88400 -32.45929 -31.26999 -30.61124 -27.88638 -26.56308 -24.69745 -22.37688 -21.49713 -20.68426 -19.19658 -17.92906 -17.76958 -16.13381 -15.58326 -15.16156 -14.70404 -14.44101 -14.29405 -13.73368 -13.67789 -13.42361 -13.34458 -12.62785 -12.15871 -11.86845 -11.52087 -11.35196 -11.31569 -10.96779 -10.40004 -10.22958 -10.01233 -9.98434 -9.48941 -8.50434 -8.43076 -7.99211 -7.87967 -6.42798 -3.83572 2.00896 3.09425 3.17449 3.19317 3.26246 3.31968 3.88702 4.06423 4.28164 4.65406 4.85552 4.94214 5.12025 5.23276 5.37228 5.51856 5.59077 5.63725 5.67574 5.84125 5.91405 6.24213 6.25030 6.43860 6.75892 7.16981 7.26186 7.34844 7.54460 8.05236 8.06690 8.60690 9.17257 9.53104 10.05014 10.74965 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.004385 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.712345 B = 6383.651400 C = 6495.150227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.513 5.513 3 C 0.046 3.954 4 C 0.443 3.557 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.023 3.977 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.127 3.873 16 C -0.007 4.007 17 C -0.009 4.009 18 N -0.497 5.497 19 C 0.178 3.822 20 N -0.568 5.568 21 H 0.416 0.584 22 H 0.054 0.946 23 H 0.099 0.901 24 H 0.012 0.988 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.392 0.608 28 H 0.271 0.729 29 H 0.099 0.901 30 H 0.038 0.962 31 H 0.169 0.831 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -10.887 -10.391 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.237 5.237 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.002 4.002 16 C -0.122 4.122 17 C -0.157 4.157 18 N -0.216 5.216 19 C -0.106 4.106 20 N -0.172 5.172 21 H 0.253 0.747 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.031 0.969 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.225 0.775 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.056 0.944 31 H 0.187 0.813 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.734 -12.083 -9.062 15.349 hybrid contribution -0.841 2.142 -0.892 2.468 sum -3.575 -9.941 -9.953 14.515 Atomic orbital electron populations 1.22571 0.87007 1.01606 1.01492 1.61573 1.08566 1.12858 1.40733 1.21882 1.00909 0.88422 0.97326 1.19695 0.85571 0.82939 0.88921 1.90494 1.43916 1.64597 1.47068 1.41859 1.49420 1.10716 1.18050 1.19698 1.32972 0.95437 0.94737 0.87919 1.25255 0.96800 0.96629 0.99212 1.69610 1.38057 1.12296 1.34396 0.85858 0.79122 0.78016 0.81304 1.20353 1.20955 1.19441 1.20526 1.01233 0.86488 0.91962 1.21111 0.88033 0.96092 1.06991 1.22082 1.01185 0.88076 1.04391 1.70272 1.04469 1.28005 1.18827 1.24893 0.98344 0.84894 1.02435 1.43354 1.15639 1.10071 1.48132 0.74655 0.92680 0.88273 0.96928 0.89037 0.93376 0.77485 0.91871 0.88256 0.94447 0.81339 0.77886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.00 60.06 0.54 0.88 16 2 N -0.51 -8.36 4.49 -245.81 -1.10 -9.47 16 3 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 4 C 0.44 10.32 7.47 -10.99 -0.08 10.24 16 5 O -0.58 -15.49 13.91 5.55 0.08 -15.41 16 6 N -0.56 -14.10 5.29 -10.97 -0.06 -14.16 16 7 C -0.30 -8.28 9.68 -14.94 -0.14 -8.42 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 11 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 15 C 0.13 1.56 5.52 -4.97 -0.03 1.54 16 16 C -0.01 -0.08 5.94 -81.60 -0.48 -0.57 16 17 C -0.01 -0.13 11.79 -17.81 -0.21 -0.34 16 18 N -0.50 -7.10 11.25 -14.66 -0.16 -7.26 16 19 C 0.18 1.92 13.04 -90.37 -1.18 0.74 16 20 N -0.57 -5.80 5.25 -10.30 -0.05 -5.86 16 21 H 0.42 3.07 8.82 -40.82 -0.36 2.71 16 22 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 23 H 0.10 1.96 5.82 -51.93 -0.30 1.65 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 26 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16 27 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.10 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.04 0.40 8.12 -51.92 -0.42 -0.02 16 31 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 278.31 15.07 4.19 4.19 Total: -1.00 -33.39 278.31 -6.88 -40.27 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.76 Total: 10.05 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.71 Total: 5.33 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.66 Total: -60.38 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.39 -6.88 -40.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.400 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds