Wall clock time and date at job start Sun Mar 29 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00214 * 2 1 4 4 C 1.50699 * 109.47358 * 66.04040 * 3 2 1 5 5 O 1.21287 * 119.99676 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00291 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00259 * 180.02562 * 6 4 3 8 8 H 1.07995 * 119.99863 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00342 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99742 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00284 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47252 * 89.99701 * 11 9 7 13 13 H 1.48498 * 109.47449 * 210.00083 * 11 9 7 14 14 H 1.48500 * 109.47004 * 329.99983 * 11 9 7 15 15 C 1.46898 * 111.00519 * 236.04171 * 2 1 3 16 16 C 1.50704 * 109.47256 * 293.95846 * 15 2 1 17 17 C 1.34664 * 126.58651 * 265.03616 * 16 15 2 18 18 N 1.34134 * 108.01786 * 179.74146 * 17 16 15 19 19 C 1.30496 * 109.25675 * 0.37372 * 18 17 16 20 20 N 1.35047 * 108.70161 * 359.62603 * 19 18 17 21 21 H 0.96997 * 126.40535 * 180.25138 * 20 19 18 22 22 H 1.09007 * 109.46643 * 183.95339 * 1 2 3 23 23 H 1.08999 * 109.47047 * 303.95555 * 1 2 3 24 24 H 1.08999 * 109.47004 * 63.96247 * 1 2 3 25 25 H 1.08999 * 109.47264 * 186.05003 * 3 2 1 26 26 H 1.09009 * 109.46450 * 306.04594 * 3 2 1 27 27 H 0.97006 * 119.99625 * 359.97438 * 6 4 3 28 28 H 0.96994 * 120.00132 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47826 * 173.95184 * 15 2 1 30 30 H 1.09012 * 109.46894 * 53.95223 * 15 2 1 31 31 H 1.07998 * 125.99171 * 359.92955 * 17 16 15 32 32 H 1.08002 * 125.65353 * 179.89694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0053 1.4454 2.1410 6 7 2.0180 3.3202 1.5232 7 6 1.6922 3.9348 2.7046 8 1 1.1299 3.3990 3.4549 9 6 2.0856 5.2472 2.9366 10 7 2.7703 5.8990 2.0238 11 14 1.6411 6.0848 4.5459 12 1 2.7177 5.8482 5.5411 13 1 1.4890 7.5444 4.3188 14 1 0.3631 5.5277 5.0575 15 6 1.9955 -0.7660 -1.1375 16 6 1.6370 -2.2205 -0.9727 17 6 2.4085 -3.1807 -0.4284 18 7 1.7236 -4.3334 -0.4646 19 6 0.5601 -4.1255 -1.0179 20 7 0.4643 -2.8193 -1.3469 21 1 -0.2940 -2.3861 -1.7691 22 1 -0.3633 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9234 25 1 3.0797 1.3444 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 2.5234 3.8014 0.8494 28 1 3.0453 6.8149 2.1859 29 1 3.0798 -0.6611 -1.1756 30 1 1.5612 -0.3873 -2.0628 31 1 3.4030 -3.0456 -0.0296 32 1 -0.2019 -4.8733 -1.1813 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261640325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:07 Heat of formation + Delta-G solvation = 8.722252 kcal Electronic energy + Delta-G solvation = -16433.297729 eV Core-core repulsion = 13622.225831 eV Total energy + Delta-G solvation = -2811.071898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.91754 -40.32666 -37.82073 -35.86314 -33.40812 -33.24829 -31.65456 -29.34215 -27.68250 -26.50923 -23.67066 -22.39786 -21.61535 -20.97935 -19.85065 -18.77750 -17.70823 -16.82841 -16.58486 -16.39249 -15.75305 -15.58291 -15.21528 -15.02742 -14.83205 -14.31606 -13.85740 -13.63645 -13.46233 -13.10401 -12.83851 -12.63784 -12.51043 -12.40183 -12.11624 -11.45421 -10.97110 -10.90128 -10.28988 -9.98586 -9.42194 -9.13232 -8.45539 -5.93836 1.09653 1.38434 1.42333 1.54556 2.07698 2.21734 2.30710 2.32652 2.92323 3.21761 3.44157 3.80713 4.03266 4.13426 4.25543 4.34706 4.48599 4.53265 4.58390 4.64671 4.72712 4.77282 5.11362 5.31033 5.42185 5.79801 5.87281 6.05507 6.15320 6.59802 6.62783 7.14965 7.17278 7.58750 8.15238 8.71826 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.062947 B = 0.004385 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.712345 B = 6383.651400 C = 6495.150227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.538 5.538 3 C 0.059 3.941 4 C 0.440 3.560 5 O -0.617 6.617 6 N -0.574 5.574 7 C -0.332 4.332 8 H 0.077 0.923 9 C -0.011 4.011 10 N -0.920 5.920 11 Si 0.991 3.009 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.274 1.274 15 C 0.132 3.868 16 C -0.013 4.013 17 C -0.036 4.036 18 N -0.540 5.540 19 C 0.190 3.810 20 N -0.558 5.558 21 H 0.431 0.569 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.397 0.603 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -11.005 -11.757 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.263 5.263 3 C -0.072 4.072 4 C 0.228 3.772 5 O -0.504 6.504 6 N -0.212 5.212 7 C -0.462 4.462 8 H 0.095 0.905 9 C -0.211 4.211 10 N -0.561 5.561 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.199 1.199 15 C 0.004 3.996 16 C -0.129 4.129 17 C -0.183 4.183 18 N -0.260 5.260 19 C -0.094 4.094 20 N -0.163 5.163 21 H 0.271 0.729 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.092 0.908 27 H 0.231 0.769 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.185 0.815 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.062 -12.191 -10.468 16.358 hybrid contribution -0.776 2.072 -0.501 2.268 sum -3.838 -10.120 -10.969 15.409 Atomic orbital electron populations 1.22399 0.87148 1.01701 1.00712 1.61474 1.08756 1.12486 1.43554 1.21746 1.02537 0.88877 0.94027 1.20830 0.83683 0.82181 0.90546 1.90475 1.45291 1.65394 1.49199 1.41921 1.50091 1.11577 1.17579 1.19631 1.34411 0.96389 0.95761 0.90519 1.25986 0.96288 0.96597 1.02242 1.69664 1.38137 1.12711 1.35617 0.84963 0.78604 0.77428 0.77560 1.19759 1.19495 1.19881 1.20564 1.02081 0.85574 0.91352 1.21103 0.88677 0.96043 1.07121 1.22271 1.01840 0.88831 1.05405 1.70245 1.06219 1.28693 1.20877 1.25678 0.97948 0.85650 1.00114 1.43327 1.15469 1.09927 1.47607 0.72862 0.91575 0.92757 0.94388 0.86607 0.90790 0.76930 0.91322 0.86955 0.91867 0.81538 0.73966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.00 127.69 1.15 2.01 16 2 N -0.54 -16.54 4.49 -931.62 -4.18 -20.72 16 3 C 0.06 1.92 5.45 85.56 0.47 2.38 16 4 C 0.44 20.61 7.47 87.66 0.66 21.27 16 5 O -0.62 -34.10 13.91 -3.05 -0.04 -34.14 16 6 N -0.57 -29.07 5.29 -307.00 -1.62 -30.69 16 7 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 10 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 11 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.13 2.88 5.52 85.56 0.47 3.35 16 16 C -0.01 -0.30 5.94 40.95 0.24 -0.06 16 17 C -0.04 -0.97 11.79 83.52 0.98 0.01 16 18 N -0.54 -14.86 11.25 -200.31 -2.25 -17.11 16 19 C 0.19 3.63 13.04 180.26 2.35 5.98 16 20 N -0.56 -9.88 5.25 -186.49 -0.98 -10.86 16 21 H 0.43 4.90 8.82 -92.71 -0.82 4.08 16 22 H 0.07 1.80 6.44 -2.38 -0.02 1.78 16 23 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 25 H 0.12 3.23 7.93 -2.39 -0.02 3.21 16 26 H 0.07 2.06 8.12 -2.38 -0.02 2.04 16 27 H 0.40 18.92 7.90 -92.70 -0.73 18.19 16 28 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.11 2.15 7.93 -2.39 -0.02 2.13 16 30 H 0.06 1.09 8.12 -2.38 -0.02 1.07 16 31 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16 32 H 0.24 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -73.73 278.31 0.44 -73.29 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.39 Total: 27.49 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 7.60 Total: 16.81 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -8.76 Total: -128.38 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.04 Total: -34.14 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -73.73 0.44 -73.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261640325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.012 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds