Wall clock time and date at job start Sun Mar 29 2020 22:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99520 * 3 2 1 5 5 H 1.48499 * 109.47618 * 29.99372 * 3 2 1 6 6 H 1.48498 * 109.47690 * 149.99522 * 3 2 1 7 7 C 1.38816 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99527 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99777 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47283 * 65.00075 * 11 10 9 13 13 N 1.46496 * 109.47246 * 305.00324 * 11 10 9 14 14 C 1.34777 * 120.00258 * 155.00083 * 13 11 10 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 11 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 11 17 17 C 1.53001 * 117.49756 * 248.61806 * 16 14 13 18 18 C 1.52999 * 59.99986 * 252.51526 * 17 16 14 19 19 C 1.52998 * 109.47292 * 185.00006 * 11 10 9 20 20 C 1.53010 * 117.49781 * 248.62245 * 19 11 10 21 21 C 1.53002 * 59.99946 * 252.50862 * 20 19 11 22 22 H 0.97004 * 120.00314 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99971 * 0.02562 * 9 7 2 24 24 H 1.09001 * 109.46987 * 60.00026 * 10 9 7 25 25 H 1.09006 * 109.47173 * 299.99918 * 10 9 7 26 26 H 0.96999 * 119.99694 * 334.99473 * 13 11 10 27 27 H 1.08996 * 115.55128 * 34.33271 * 16 14 13 28 28 H 1.09004 * 117.49834 * 0.02562 * 17 16 14 29 29 H 1.08997 * 117.49999 * 145.02096 * 17 16 14 30 30 H 1.09004 * 117.50109 * 252.51157 * 18 17 16 31 31 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 32 32 H 1.08994 * 115.55000 * 34.32828 * 19 11 10 33 33 H 1.09002 * 117.49733 * 0.02562 * 20 19 11 34 34 H 1.08998 * 117.49457 * 145.02120 * 20 19 11 35 35 H 1.08994 * 117.50298 * 252.51221 * 21 20 19 36 36 H 1.09003 * 117.51482 * 107.47978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.6163 -2.1912 0.0024 12 1 5.8935 -1.6982 0.9342 13 7 5.9526 -1.3225 -1.1283 14 6 7.0505 -0.5426 -1.0758 15 8 7.7599 -0.5595 -0.0923 16 6 7.3966 0.3506 -2.2393 17 6 8.6443 -0.0002 -3.0524 18 6 8.6554 1.2118 -2.1186 19 6 6.3805 -3.5107 -0.1234 20 6 7.1810 -3.9821 1.0924 21 6 7.9089 -3.4432 -0.1407 22 1 -0.4851 0.8401 -0.0004 23 1 3.8646 -0.3620 0.0014 24 1 3.8491 -3.0421 -0.8892 25 1 3.8485 -3.0426 0.8909 26 1 5.3851 -1.3088 -1.9148 27 1 6.5475 0.7729 -2.7766 28 1 9.2145 -0.8772 -2.7461 29 1 8.6162 0.1911 -4.1251 30 1 8.6346 2.2006 -2.5770 31 1 9.2330 1.1327 -1.1977 32 1 5.9034 -4.2734 -0.7387 33 1 7.1629 -3.3524 1.9819 34 1 7.2305 -5.0552 1.2770 35 1 8.4373 -4.1616 -0.7673 36 1 8.3700 -2.4585 -0.0629 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269033074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:07 Heat of formation + Delta-G solvation = 25.416017 kcal Electronic energy + Delta-G solvation = -17239.623808 eV Core-core repulsion = 14532.816150 eV Total energy + Delta-G solvation = -2706.807658 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08652 -37.73310 -35.86615 -35.17382 -33.45703 -31.34287 -28.65002 -24.73195 -23.57179 -22.52901 -22.16320 -21.32638 -20.24496 -19.99025 -17.84657 -17.24105 -16.22693 -15.46556 -15.01373 -14.87433 -14.36399 -14.23489 -13.58525 -13.24795 -12.79784 -12.59412 -12.28842 -11.92725 -11.65984 -11.32602 -11.26955 -11.07313 -10.90227 -10.70076 -10.56672 -10.22698 -10.16097 -9.98672 -9.63866 -9.59005 -8.96416 -8.75227 -7.29766 -5.81193 -3.17494 2.61109 3.23506 3.33692 3.39703 3.42729 3.81815 4.05033 4.55337 4.68187 4.72762 4.78516 4.81807 5.09612 5.15228 5.21709 5.34360 5.46185 5.47016 5.57998 5.70045 5.75745 5.79698 5.85396 5.90443 6.02118 6.05876 6.28165 6.39662 6.43602 6.56891 6.82667 7.75435 7.94075 8.37183 8.43136 9.15985 9.88207 10.07665 11.36930 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.008268 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.877246 B = 3385.625868 C = 4467.079345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.164 3.836 12 H 0.087 0.913 13 N -0.707 5.707 14 C 0.544 3.456 15 O -0.546 6.546 16 C -0.195 4.195 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.162 4.162 20 C -0.171 4.171 21 C -0.185 4.185 22 H 0.260 0.740 23 H 0.363 0.637 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.405 0.595 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.303 -3.144 -5.393 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.059 3.941 12 H 0.105 0.895 13 N -0.357 5.357 14 C 0.331 3.669 15 O -0.425 6.425 16 C -0.216 4.216 17 C -0.190 4.190 18 C -0.187 4.187 19 C -0.182 4.182 20 C -0.208 4.208 21 C -0.222 4.222 22 H 0.070 0.930 23 H 0.196 0.804 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.240 0.760 27 H 0.142 0.858 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.528 -3.246 -4.676 18.429 hybrid contribution 0.031 1.171 -0.403 1.239 sum 17.559 -2.075 -5.079 18.396 Atomic orbital electron populations 1.69695 1.05070 1.25876 1.57327 1.24657 0.95209 0.97146 1.01899 0.86590 0.79348 0.85087 0.77802 1.21029 1.21609 1.20356 1.19048 0.80475 0.94789 1.43309 0.89080 1.42700 1.04095 1.02099 1.91245 1.20899 0.86940 0.89827 0.99823 1.20871 0.95176 0.88114 0.89889 0.89455 1.45962 1.26585 1.42360 1.20769 1.19582 0.80570 0.79475 0.87313 1.90594 1.50912 1.67488 1.33521 1.22244 0.94741 1.04149 1.00506 1.22896 0.98136 1.00253 0.97680 1.22923 0.98320 0.95288 1.02123 1.22625 0.93676 0.99096 1.02819 1.22894 1.04413 1.00768 0.92738 1.23244 0.94068 1.04004 1.00898 0.92998 0.80435 0.94809 0.93835 0.75993 0.85833 0.88350 0.87976 0.88120 0.87473 0.87683 0.88769 0.89087 0.89848 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 7 C -0.25 -6.89 10.47 -15.06 -0.16 -7.05 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.76 -17.64 5.24 -59.91 -0.31 -17.96 16 10 C 0.15 2.86 5.80 -4.04 -0.02 2.84 16 11 C 0.16 2.65 2.43 -67.93 -0.17 2.49 16 12 H 0.09 1.60 7.33 -51.93 -0.38 1.22 16 13 N -0.71 -10.74 4.50 -53.81 -0.24 -10.98 16 14 C 0.54 8.36 6.94 -10.98 -0.08 8.29 16 15 O -0.55 -9.79 13.29 5.56 0.07 -9.72 16 16 C -0.20 -2.38 6.19 -91.77 -0.57 -2.95 16 17 C -0.15 -1.48 10.23 -26.73 -0.27 -1.75 16 18 C -0.15 -1.61 10.04 -26.73 -0.27 -1.88 16 19 C -0.16 -2.23 5.36 -90.61 -0.49 -2.72 16 20 C -0.17 -2.19 10.18 -26.72 -0.27 -2.46 16 21 C -0.19 -2.46 9.73 -26.73 -0.26 -2.72 16 22 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 23 H 0.36 8.49 5.19 -40.82 -0.21 8.27 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.41 5.73 8.60 -40.82 -0.35 5.38 16 27 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.11 1.29 7.67 -51.93 -0.40 0.89 16 32 H 0.11 1.34 8.11 -51.93 -0.42 0.92 16 33 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.12 1.78 5.02 -51.93 -0.26 1.52 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -32.00 299.83 -7.96 -39.96 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.42 Total: 12.82 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.65 Total: -7.81 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.22 Total: -57.28 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.00 -7.96 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269033074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.380 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds