Wall clock time and date at job start Sun Mar 29 2020 22:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47155 * 269.99520 * 3 2 1 5 5 H 1.48499 * 109.47618 * 29.99372 * 3 2 1 6 6 H 1.48498 * 109.47690 * 149.99522 * 3 2 1 7 7 C 1.38816 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99527 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99777 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47283 * 65.00075 * 11 10 9 13 13 N 1.46496 * 109.47246 * 305.00324 * 11 10 9 14 14 C 1.34777 * 120.00258 * 155.00083 * 13 11 10 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 11 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 11 17 17 C 1.53001 * 117.49756 * 248.61806 * 16 14 13 18 18 C 1.52999 * 59.99986 * 252.51526 * 17 16 14 19 19 C 1.52998 * 109.47292 * 185.00006 * 11 10 9 20 20 C 1.53010 * 117.49781 * 248.62245 * 19 11 10 21 21 C 1.53002 * 59.99946 * 252.50862 * 20 19 11 22 22 H 0.97004 * 120.00314 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99971 * 0.02562 * 9 7 2 24 24 H 1.09001 * 109.46987 * 60.00026 * 10 9 7 25 25 H 1.09006 * 109.47173 * 299.99918 * 10 9 7 26 26 H 0.96999 * 119.99694 * 334.99473 * 13 11 10 27 27 H 1.08996 * 115.55128 * 34.33271 * 16 14 13 28 28 H 1.09004 * 117.49834 * 0.02562 * 17 16 14 29 29 H 1.08997 * 117.49999 * 145.02096 * 17 16 14 30 30 H 1.09004 * 117.50109 * 252.51157 * 18 17 16 31 31 H 1.08998 * 117.52032 * 107.48340 * 18 17 16 32 32 H 1.08994 * 115.55000 * 34.32828 * 19 11 10 33 33 H 1.09002 * 117.49733 * 0.02562 * 20 19 11 34 34 H 1.08998 * 117.49457 * 145.02120 * 20 19 11 35 35 H 1.08994 * 117.50298 * 252.51221 * 21 20 19 36 36 H 1.09003 * 117.51482 * 107.47978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.6163 -2.1912 0.0024 12 1 5.8935 -1.6982 0.9342 13 7 5.9526 -1.3225 -1.1283 14 6 7.0505 -0.5426 -1.0758 15 8 7.7599 -0.5595 -0.0923 16 6 7.3966 0.3506 -2.2393 17 6 8.6443 -0.0002 -3.0524 18 6 8.6554 1.2118 -2.1186 19 6 6.3805 -3.5107 -0.1234 20 6 7.1810 -3.9821 1.0924 21 6 7.9089 -3.4432 -0.1407 22 1 -0.4851 0.8401 -0.0004 23 1 3.8646 -0.3620 0.0014 24 1 3.8491 -3.0421 -0.8892 25 1 3.8485 -3.0426 0.8909 26 1 5.3851 -1.3088 -1.9148 27 1 6.5475 0.7729 -2.7766 28 1 9.2145 -0.8772 -2.7461 29 1 8.6162 0.1911 -4.1251 30 1 8.6346 2.2006 -2.5770 31 1 9.2330 1.1327 -1.1977 32 1 5.9034 -4.2734 -0.7387 33 1 7.1629 -3.3524 1.9819 34 1 7.2305 -5.0552 1.2770 35 1 8.4373 -4.1616 -0.7673 36 1 8.3700 -2.4585 -0.0629 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269033074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:07 Heat of formation + Delta-G solvation = 4.113993 kcal Electronic energy + Delta-G solvation = -17240.547533 eV Core-core repulsion = 14532.816150 eV Total energy + Delta-G solvation = -2707.731383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26407 -38.86776 -36.85366 -36.77943 -35.00692 -33.32649 -30.23498 -26.20975 -25.00350 -23.31989 -23.20326 -22.99237 -21.45165 -21.15669 -19.77622 -18.41915 -17.42131 -16.77218 -16.58964 -16.06530 -15.87400 -15.42897 -15.06011 -14.78330 -14.54125 -13.97368 -13.62517 -13.46434 -12.91909 -12.73204 -12.58732 -12.42856 -12.31908 -12.15378 -11.86545 -11.54324 -11.47521 -11.23736 -11.13615 -11.05245 -10.74304 -9.99961 -9.35371 -8.05807 -5.39563 1.33375 1.36590 1.43084 1.50045 2.10529 2.43754 2.93250 2.98155 3.25687 3.40318 3.74371 3.83585 3.86201 4.01214 4.02249 4.12509 4.21085 4.29877 4.39767 4.58021 4.73717 4.80031 4.86552 4.90701 5.00948 5.04698 5.06277 5.23121 5.26686 5.35314 5.54008 5.73090 6.17572 6.57888 7.03210 7.25921 7.78210 7.96977 9.15419 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.008268 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.877246 B = 3385.625868 C = 4467.079345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.063 0.937 9 N -0.757 5.757 10 C 0.153 3.847 11 C 0.175 3.825 12 H 0.062 0.938 13 N -0.707 5.707 14 C 0.538 3.462 15 O -0.577 6.577 16 C -0.213 4.213 17 C -0.130 4.130 18 C -0.151 4.151 19 C -0.166 4.166 20 C -0.167 4.167 21 C -0.180 4.180 22 H 0.259 0.741 23 H 0.364 0.636 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.411 0.589 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.233 -3.087 -6.714 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.249 4.249 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.364 4.364 8 H 0.081 0.919 9 N -0.403 5.403 10 C 0.026 3.974 11 C 0.070 3.930 12 H 0.081 0.919 13 N -0.356 5.356 14 C 0.326 3.674 15 O -0.458 6.458 16 C -0.234 4.234 17 C -0.167 4.167 18 C -0.188 4.188 19 C -0.185 4.185 20 C -0.204 4.204 21 C -0.217 4.217 22 H 0.067 0.933 23 H 0.197 0.803 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.247 0.753 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.148 0.852 30 H 0.141 0.859 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.497 -3.216 -6.015 20.656 hybrid contribution -0.553 1.051 0.042 1.188 sum 18.944 -2.166 -5.974 19.981 Atomic orbital electron populations 1.69861 1.06910 1.26653 1.59555 1.25406 0.96000 1.00837 1.02692 0.85500 0.77993 0.80327 0.78449 1.19393 1.22273 1.19446 1.19044 0.82403 0.93668 1.41295 0.91855 1.42686 1.02606 1.03896 1.91066 1.21030 0.88300 0.87937 1.00086 1.20594 0.93459 0.89495 0.89451 0.91939 1.45960 1.26830 1.42336 1.20516 1.20164 0.79961 0.79381 0.87846 1.90583 1.51820 1.68467 1.34979 1.22291 0.96119 1.04743 1.00254 1.23012 0.95493 0.99374 0.98850 1.23000 0.96992 0.96821 1.02019 1.22552 0.93881 0.98069 1.04031 1.22984 1.03475 1.01949 0.92007 1.23185 0.93481 1.03503 1.01482 0.93253 0.80292 0.93502 0.94077 0.75315 0.84556 0.88795 0.85161 0.85927 0.89302 0.86098 0.89979 0.86713 0.87768 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.19 13.97 21.65 0.30 -61.89 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 3 Si 0.95 45.85 27.74 68.60 1.90 47.75 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.27 -12.44 6.52 99.48 0.65 -11.79 16 7 C -0.23 -13.11 10.47 84.04 0.88 -12.23 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.83 16 9 N -0.76 -34.83 5.24 -343.45 -1.80 -36.62 16 10 C 0.15 5.60 5.80 86.38 0.50 6.10 16 11 C 0.18 5.51 2.43 44.99 0.11 5.62 16 12 H 0.06 2.30 7.33 -2.39 -0.02 2.28 16 13 N -0.71 -20.55 4.50 -442.54 -1.99 -22.54 16 14 C 0.54 15.95 6.94 87.66 0.61 16.56 16 15 O -0.58 -20.59 13.29 -3.03 -0.04 -20.63 16 16 C -0.21 -4.73 6.19 -11.54 -0.07 -4.80 16 17 C -0.13 -2.15 10.23 30.59 0.31 -1.84 16 18 C -0.15 -2.93 10.04 30.59 0.31 -2.62 16 19 C -0.17 -4.26 5.36 -10.79 -0.06 -4.31 16 20 C -0.17 -3.98 10.18 30.60 0.31 -3.67 16 21 C -0.18 -4.45 9.73 30.60 0.30 -4.15 16 22 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.36 16.57 5.19 -92.71 -0.48 16.09 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.41 10.92 8.60 -92.71 -0.80 10.13 16 27 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.09 2.07 7.67 -2.39 -0.02 2.05 16 32 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 33 H 0.08 2.16 8.05 -2.39 -0.02 2.15 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.83 5.02 -2.39 -0.01 2.82 16 Total: -1.00 -69.19 299.83 1.79 -67.40 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.25 Total: 34.78 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 3.67 Total: -8.25 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.49 Total: -121.06 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -69.19 1.79 -67.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269033074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.511 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds