Wall clock time and date at job start Sun Mar 29 2020 22:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00461 * 2 1 4 4 H 1.48496 * 109.47436 * 239.99963 * 3 2 1 5 5 H 1.48501 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47145 * 119.99646 * 3 2 1 7 7 C 1.38815 * 119.99132 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99280 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00678 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46955 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47530 * 295.00251 * 11 10 9 13 13 N 1.46501 * 109.46948 * 55.00344 * 11 10 9 14 14 C 1.34779 * 119.99876 * 204.99790 * 13 11 10 15 15 O 1.21276 * 120.00124 * 359.97438 * 14 13 11 16 16 C 1.50697 * 119.99706 * 179.97438 * 14 13 11 17 17 C 1.52999 * 117.50197 * 248.74480 * 16 14 13 18 18 C 1.53003 * 117.49759 * 180.08928 * 16 14 13 19 19 C 1.53001 * 109.47252 * 174.99934 * 11 10 9 20 20 C 1.53000 * 117.50223 * 180.02562 * 19 11 10 21 21 C 1.52997 * 117.49889 * 111.37590 * 19 11 10 22 22 H 0.97007 * 119.99653 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99706 * 0.02562 * 9 7 2 24 24 H 1.08998 * 109.47486 * 60.00134 * 10 9 7 25 25 H 1.08996 * 109.47225 * 299.99893 * 10 9 7 26 26 H 0.96998 * 120.00141 * 25.00146 * 13 11 10 27 27 H 1.08995 * 115.55242 * 34.42253 * 16 14 13 28 28 H 1.09005 * 117.49929 * 0.02562 * 17 16 14 29 29 H 1.09003 * 117.50294 * 145.02061 * 17 16 14 30 30 H 1.08998 * 117.50242 * 214.98205 * 18 16 14 31 31 H 1.09007 * 117.49660 * 359.97438 * 18 16 14 32 32 H 1.09002 * 115.55911 * 325.69018 * 19 11 10 33 33 H 1.08990 * 117.49990 * 145.01974 * 20 19 11 34 34 H 1.09004 * 117.49237 * 359.97438 * 20 19 11 35 35 H 1.08999 * 117.49685 * 0.02562 * 21 19 11 36 36 H 1.08997 * 117.50044 * 214.98097 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0027 11 6 1.0634 -4.8197 -0.0031 12 1 0.4975 -4.8143 0.9284 13 7 0.1436 -4.6753 -1.1342 14 6 -1.0809 -5.2361 -1.0828 15 8 -1.4211 -5.8607 -0.1005 16 6 -2.0273 -5.0870 -2.2460 17 6 -3.2723 -4.2224 -2.0376 18 6 -3.4034 -5.7449 -2.1259 19 6 1.8241 -6.1412 -0.1300 20 6 1.0013 -7.4310 -0.1498 21 6 1.8316 -7.0715 1.0846 22 1 -0.4850 0.8401 -0.0004 23 1 0.3554 -2.3880 -0.0023 24 1 2.6845 -3.7155 0.8872 25 1 2.6844 -3.7138 -0.8927 26 1 0.4158 -4.1761 -1.9200 27 1 -1.5620 -5.0699 -3.2315 28 1 -3.4067 -3.7611 -1.0591 29 1 -3.6262 -3.6367 -2.8860 30 1 -3.8435 -6.1603 -3.0325 31 1 -3.6240 -6.2860 -1.2057 32 1 2.7236 -6.1088 -0.7448 33 1 1.3597 -8.2470 -0.7772 34 1 -0.0820 -7.3380 -0.0720 35 1 1.2943 -6.7422 1.9740 36 1 2.7360 -7.6512 1.2690 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269033075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:10 Heat of formation + Delta-G solvation = 21.592414 kcal Electronic energy + Delta-G solvation = -17155.791726 eV Core-core repulsion = 14448.818264 eV Total energy + Delta-G solvation = -2706.973462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89050 -37.58179 -35.66360 -34.96977 -33.31943 -31.07903 -28.17787 -24.54300 -23.61683 -22.30190 -22.08140 -21.46998 -20.07245 -19.79667 -17.45812 -16.90174 -16.05197 -15.24927 -15.04628 -14.63492 -14.38144 -13.95634 -13.38815 -13.14241 -12.86283 -12.36756 -12.08384 -11.64687 -11.46167 -11.23029 -11.03203 -10.90376 -10.80183 -10.47532 -10.33932 -10.21099 -10.08675 -9.92076 -9.68600 -9.42137 -8.91461 -8.56405 -6.96796 -5.78625 -3.08427 2.81903 3.40654 3.42979 3.47130 3.48040 4.00580 4.19211 4.55323 4.88868 4.91143 4.98773 5.03057 5.19875 5.26293 5.33752 5.50124 5.55547 5.70476 5.78873 5.86931 5.89311 5.93809 6.08744 6.12442 6.22805 6.24780 6.38895 6.52084 6.55256 6.70125 6.99530 7.66893 7.95104 8.39212 8.62455 9.50926 10.06813 10.42553 11.43610 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.007270 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.155724 B = 3850.424177 C = 5011.634233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.086 0.914 13 N -0.702 5.702 14 C 0.547 3.453 15 O -0.550 6.550 16 C -0.192 4.192 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.185 4.185 21 C -0.172 4.172 22 H 0.256 0.744 23 H 0.386 0.614 24 H 0.035 0.965 25 H 0.024 0.976 26 H 0.405 0.595 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -12.507 -4.935 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.105 0.895 13 N -0.351 5.351 14 C 0.333 3.667 15 O -0.429 6.429 16 C -0.213 4.213 17 C -0.186 4.186 18 C -0.190 4.190 19 C -0.183 4.183 20 C -0.222 4.222 21 C -0.209 4.209 22 H 0.066 0.934 23 H 0.220 0.780 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.239 0.761 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.853 -12.798 -4.225 13.604 hybrid contribution 0.526 1.254 -0.464 1.437 sum -1.328 -11.545 -4.689 12.531 Atomic orbital electron populations 1.69663 1.05094 1.25782 1.57360 1.24750 0.95522 0.97696 1.02832 0.86257 0.78507 0.83484 0.77841 1.21274 1.21691 1.21262 1.19173 0.91007 0.84076 1.43202 0.91191 1.42337 1.06008 0.99694 1.89579 1.20915 0.93037 0.85136 0.98914 1.20793 0.90156 0.92680 0.90006 0.89550 1.45876 1.14394 1.54101 1.20766 1.19541 0.81772 0.78096 0.87250 1.90580 1.76359 1.42135 1.33843 1.22170 0.90553 1.09581 0.99003 1.22930 0.97879 0.93569 1.04209 1.22921 0.96324 0.95819 1.03911 1.22657 1.01453 0.91512 1.02646 1.23263 1.00749 0.97454 1.00735 1.22891 1.02025 1.03205 0.92814 0.93449 0.77973 0.94744 0.95776 0.76069 0.86231 0.87961 0.87957 0.88397 0.87626 0.87938 0.89950 0.86450 0.88781 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.22 5.43 -59.91 -0.33 -18.54 16 10 C 0.15 2.93 5.80 -4.04 -0.02 2.91 16 11 C 0.17 2.92 2.43 -67.93 -0.17 2.76 16 12 H 0.09 1.71 7.33 -51.93 -0.38 1.33 16 13 N -0.70 -11.56 4.50 -53.80 -0.24 -11.81 16 14 C 0.55 9.08 6.94 -10.99 -0.08 9.01 16 15 O -0.55 -10.52 13.28 5.56 0.07 -10.44 16 16 C -0.19 -2.57 6.19 -91.77 -0.57 -3.14 16 17 C -0.15 -1.92 10.24 -26.70 -0.27 -2.19 16 18 C -0.15 -1.81 10.05 -26.70 -0.27 -2.08 16 19 C -0.16 -2.40 5.36 -90.62 -0.49 -2.88 16 20 C -0.19 -2.64 9.73 -26.71 -0.26 -2.90 16 21 C -0.17 -2.35 10.18 -26.71 -0.27 -2.62 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.39 10.26 7.33 -40.82 -0.30 9.96 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.40 6.37 8.60 -40.82 -0.35 6.02 16 27 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.11 1.39 7.67 -51.93 -0.40 0.99 16 32 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.12 1.94 5.02 -51.93 -0.26 1.68 16 35 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -30.86 302.94 -8.32 -39.18 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.46 Total: 15.46 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.64 Total: -8.44 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.16 Total: -57.52 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.86 -8.32 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269033075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.770 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds