Wall clock time and date at job start Sun Mar 29 2020 22:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47066 * 269.99555 * 3 2 1 5 5 H 1.48501 * 109.47471 * 29.99759 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99830 * 3 2 1 7 7 C 1.38811 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47171 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.90908 * 43.75361 * 11 10 9 13 13 C 1.53786 * 113.61464 * 174.99989 * 11 10 9 14 14 C 1.53781 * 87.17350 * 140.02626 * 13 11 10 15 15 H 1.08998 * 113.61196 * 219.97759 * 14 13 11 16 16 N 1.46505 * 113.61334 * 89.07333 * 14 13 11 17 17 C 1.34776 * 119.99597 * 154.99978 * 16 14 13 18 18 O 1.21275 * 120.00338 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99715 * 180.02562 * 17 16 14 20 20 C 1.53001 * 117.49709 * 248.62382 * 19 17 16 21 21 C 1.52997 * 117.49777 * 180.02562 * 19 17 16 22 22 C 1.53781 * 87.08070 * 334.52830 * 14 13 11 23 23 H 0.97010 * 119.99988 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99566 * 359.97438 * 9 7 2 25 25 H 1.09007 * 109.46596 * 59.99987 * 10 9 7 26 26 H 1.08994 * 109.47005 * 300.00297 * 10 9 7 27 27 H 1.09002 * 113.61357 * 25.43543 * 13 11 10 28 28 H 1.09002 * 113.61608 * 254.61705 * 13 11 10 29 29 H 0.96995 * 120.00170 * 335.00476 * 16 14 13 30 30 H 1.08998 * 115.54819 * 34.32926 * 19 17 16 31 31 H 1.09005 * 117.49492 * 359.97438 * 20 19 17 32 32 H 1.08994 * 117.49934 * 145.01881 * 20 19 17 33 33 H 1.08999 * 117.49881 * 214.97744 * 21 19 17 34 34 H 1.09005 * 117.50041 * 359.97438 * 21 19 17 35 35 H 1.09005 * 113.61471 * 139.98321 * 22 14 13 36 36 H 1.08996 * 113.61178 * 270.79663 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.2365 -4.6710 -0.6929 13 6 1.7302 -6.2001 -0.1216 14 6 0.7052 -6.7022 0.9091 15 1 1.1244 -7.3925 1.6411 16 7 -0.5381 -7.1927 0.3092 17 6 -1.2942 -8.0936 0.9675 18 8 -0.9456 -8.4977 2.0565 19 6 -2.5729 -8.5986 0.3502 20 6 -3.8888 -8.1814 1.0100 21 6 -3.3870 -9.6198 1.1474 22 6 0.6165 -5.2512 1.4107 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6846 -3.7146 0.8906 26 1 2.6846 -3.7146 -0.8894 27 1 2.7586 -6.2221 0.2390 28 1 1.6172 -6.6536 -1.1063 29 1 -0.8171 -6.8693 -0.5616 30 1 -2.5634 -8.6991 -0.7351 31 1 -3.8295 -7.5420 1.8908 32 1 -4.7452 -8.0072 0.3588 33 1 -3.9132 -10.3922 0.5865 34 1 -2.9975 -9.9266 2.1181 35 1 -0.3966 -4.9375 1.6627 36 1 1.3394 -5.0142 2.1913 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283011827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:42 Heat of formation + Delta-G solvation = 13.974757 kcal Electronic energy + Delta-G solvation = -16445.967485 eV Core-core repulsion = 13738.663697 eV Total energy + Delta-G solvation = -2707.303789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31554 -38.64619 -36.16619 -34.51136 -33.06961 -30.83053 -27.04098 -25.48354 -24.81152 -23.08835 -22.63664 -21.38569 -20.29549 -19.05528 -17.65586 -17.01020 -15.98605 -15.37524 -14.94119 -14.76761 -14.48083 -14.00727 -13.77549 -13.31573 -12.75954 -12.71918 -12.36963 -12.12689 -11.78267 -11.63739 -11.02972 -10.85389 -10.82143 -10.73515 -10.46669 -10.33139 -10.07305 -9.90403 -9.81226 -9.59168 -8.98823 -8.82881 -6.88873 -5.74752 -3.02888 2.41016 3.03463 3.44556 3.49577 3.51449 3.66809 4.49708 4.57995 4.59934 4.66506 4.71386 4.84391 4.92889 5.13409 5.15876 5.37820 5.50706 5.59605 5.72446 5.75691 5.88858 5.89908 5.94976 6.03175 6.12540 6.25953 6.33693 6.44104 6.65574 6.80037 6.95406 7.48001 7.71566 8.18697 8.44574 9.55498 10.14833 10.49286 11.48294 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.004166 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.429714 B = 6719.090269 C = 7169.561599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.114 3.886 15 H 0.098 0.902 16 N -0.705 5.705 17 C 0.544 3.456 18 O -0.544 6.544 19 C -0.196 4.196 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.139 4.139 23 H 0.254 0.746 24 H 0.383 0.617 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.402 0.598 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -18.078 -1.170 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.177 4.177 14 C 0.009 3.991 15 H 0.116 0.884 16 N -0.354 5.354 17 C 0.331 3.669 18 O -0.422 6.422 19 C -0.217 4.217 20 C -0.189 4.189 21 C -0.187 4.187 22 C -0.177 4.177 23 H 0.064 0.936 24 H 0.217 0.783 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.184 -18.243 -0.373 18.721 hybrid contribution 0.041 1.264 -0.585 1.394 sum -4.144 -16.979 -0.959 17.504 Atomic orbital electron populations 1.69665 1.05119 1.25579 1.57972 1.24735 0.95523 0.97679 1.03147 0.86189 0.78660 0.83861 0.77492 1.21751 1.21778 1.20773 1.19255 0.91040 0.84288 1.42431 0.91236 1.42355 1.05845 1.00010 1.89404 1.20633 0.93013 0.85213 0.97661 1.22798 0.99080 0.94203 0.97066 0.89430 1.23311 0.98890 0.96591 0.98859 1.21949 0.84511 0.95988 0.96626 0.88360 1.45613 1.23547 1.43663 1.22621 1.19654 0.84119 0.78276 0.84890 1.90683 1.72071 1.58509 1.20887 1.22201 0.91494 1.07873 1.00119 1.22945 0.94672 0.98571 1.02734 1.22936 1.01174 0.92382 1.02164 1.23457 1.02446 0.94153 0.97678 0.93568 0.78339 0.96216 0.96404 0.88729 0.91288 0.76294 0.85866 0.88114 0.87707 0.88008 0.87451 0.91364 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.79 5.60 -59.91 -0.34 -19.12 16 10 C 0.16 3.26 6.10 -4.05 -0.02 3.24 16 11 C -0.11 -1.76 3.64 -89.67 -0.33 -2.09 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C -0.14 -1.70 7.38 -25.92 -0.19 -1.89 16 14 C 0.11 1.50 4.32 -67.11 -0.29 1.21 16 15 H 0.10 1.37 7.47 -51.93 -0.39 0.98 16 16 N -0.70 -8.30 5.26 -53.01 -0.28 -8.58 16 17 C 0.54 7.04 7.61 -10.98 -0.08 6.95 16 18 O -0.54 -9.09 15.86 5.56 0.09 -9.00 16 19 C -0.20 -1.85 6.19 -91.77 -0.57 -2.42 16 20 C -0.15 -1.31 10.23 -26.75 -0.27 -1.58 16 21 C -0.15 -1.30 10.04 -26.76 -0.27 -1.56 16 22 C -0.14 -2.12 7.44 -25.78 -0.19 -2.31 16 23 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16 25 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.40 3.89 8.70 -40.82 -0.36 3.53 16 30 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.40 7.91 -51.93 -0.41 0.99 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -33.06 305.75 -8.30 -41.36 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.62 Total: 8.90 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.46 Total: -7.93 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.11 Total: -55.54 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.06 -8.30 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283011827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.338 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds