Wall clock time and date at job start Sun Mar 29 2020 22:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99982 * 2 1 4 4 H 1.48503 * 109.47066 * 269.99555 * 3 2 1 5 5 H 1.48501 * 109.47471 * 29.99759 * 3 2 1 6 6 H 1.48502 * 109.47127 * 149.99830 * 3 2 1 7 7 C 1.38811 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47171 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.90908 * 43.75361 * 11 10 9 13 13 C 1.53786 * 113.61464 * 174.99989 * 11 10 9 14 14 C 1.53781 * 87.17350 * 140.02626 * 13 11 10 15 15 H 1.08998 * 113.61196 * 219.97759 * 14 13 11 16 16 N 1.46505 * 113.61334 * 89.07333 * 14 13 11 17 17 C 1.34776 * 119.99597 * 154.99978 * 16 14 13 18 18 O 1.21275 * 120.00338 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99715 * 180.02562 * 17 16 14 20 20 C 1.53001 * 117.49709 * 248.62382 * 19 17 16 21 21 C 1.52997 * 117.49777 * 180.02562 * 19 17 16 22 22 C 1.53781 * 87.08070 * 334.52830 * 14 13 11 23 23 H 0.97010 * 119.99988 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99566 * 359.97438 * 9 7 2 25 25 H 1.09007 * 109.46596 * 59.99987 * 10 9 7 26 26 H 1.08994 * 109.47005 * 300.00297 * 10 9 7 27 27 H 1.09002 * 113.61357 * 25.43543 * 13 11 10 28 28 H 1.09002 * 113.61608 * 254.61705 * 13 11 10 29 29 H 0.96995 * 120.00170 * 335.00476 * 16 14 13 30 30 H 1.08998 * 115.54819 * 34.32926 * 19 17 16 31 31 H 1.09005 * 117.49492 * 359.97438 * 20 19 17 32 32 H 1.08994 * 117.49934 * 145.01881 * 20 19 17 33 33 H 1.08999 * 117.49881 * 214.97744 * 21 19 17 34 34 H 1.09005 * 117.50041 * 359.97438 * 21 19 17 35 35 H 1.09005 * 113.61471 * 139.98321 * 22 14 13 36 36 H 1.08996 * 113.61178 * 270.79663 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.2365 -4.6710 -0.6929 13 6 1.7302 -6.2001 -0.1216 14 6 0.7052 -6.7022 0.9091 15 1 1.1244 -7.3925 1.6411 16 7 -0.5381 -7.1927 0.3092 17 6 -1.2942 -8.0936 0.9675 18 8 -0.9456 -8.4977 2.0565 19 6 -2.5729 -8.5986 0.3502 20 6 -3.8888 -8.1814 1.0100 21 6 -3.3870 -9.6198 1.1474 22 6 0.6165 -5.2512 1.4107 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.6846 -3.7146 0.8906 26 1 2.6846 -3.7146 -0.8894 27 1 2.7586 -6.2221 0.2390 28 1 1.6172 -6.6536 -1.1063 29 1 -0.8171 -6.8693 -0.5616 30 1 -2.5634 -8.6991 -0.7351 31 1 -3.8295 -7.5420 1.8908 32 1 -4.7452 -8.0072 0.3588 33 1 -3.9132 -10.3922 0.5865 34 1 -2.9975 -9.9266 2.1181 35 1 -0.3966 -4.9375 1.6627 36 1 1.3394 -5.0142 2.1913 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283011827.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:42 Heat of formation + Delta-G solvation = -8.594096 kcal Electronic energy + Delta-G solvation = -16446.946144 eV Core-core repulsion = 13738.663697 eV Total energy + Delta-G solvation = -2708.282448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37149 -39.76141 -37.03169 -36.30835 -34.40235 -32.76776 -28.66884 -26.64124 -26.04589 -24.74749 -23.30655 -22.85864 -21.22995 -20.31322 -19.07754 -18.51553 -17.07375 -16.71045 -16.22383 -15.99601 -15.84041 -15.31740 -15.16246 -14.97354 -14.39671 -13.77224 -13.54425 -13.40271 -13.13028 -12.91040 -12.70763 -12.43937 -12.18314 -11.93491 -11.76948 -11.54017 -11.45025 -11.36460 -11.15794 -10.93370 -10.85238 -10.05394 -8.98453 -7.95504 -5.23953 1.44643 1.46970 1.48808 1.57299 2.10410 2.56003 2.93209 3.37519 3.57683 3.58344 3.71706 3.86336 3.92297 3.95730 3.99919 4.22299 4.32625 4.55350 4.73933 4.74796 4.82981 4.86823 4.90808 4.94819 4.97624 5.04076 5.14046 5.22883 5.26673 5.36619 5.49013 5.67055 6.27391 6.53821 7.21961 7.33285 8.11039 8.33562 9.28192 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.040663 B = 0.004166 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.429714 B = 6719.090269 C = 7169.561599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.110 4.110 12 H 0.087 0.913 13 C -0.115 4.115 14 C 0.123 3.877 15 H 0.091 0.909 16 N -0.697 5.697 17 C 0.537 3.463 18 O -0.589 6.589 19 C -0.199 4.199 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.144 4.144 23 H 0.251 0.749 24 H 0.373 0.627 25 H 0.019 0.981 26 H 0.023 0.977 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.415 0.585 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 -18.973 -2.469 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.128 4.128 12 H 0.105 0.895 13 C -0.154 4.154 14 C 0.017 3.983 15 H 0.110 0.890 16 N -0.347 5.347 17 C 0.325 3.675 18 O -0.470 6.470 19 C -0.220 4.220 20 C -0.186 4.186 21 C -0.185 4.185 22 C -0.182 4.182 23 H 0.060 0.940 24 H 0.205 0.795 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.252 0.748 30 H 0.172 0.828 31 H 0.099 0.901 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.853 -19.161 -1.702 19.618 hybrid contribution -0.035 1.507 -0.145 1.515 sum -3.888 -17.653 -1.847 18.171 Atomic orbital electron populations 1.69821 1.06638 1.26060 1.59589 1.25574 0.96415 1.01138 1.03709 0.85133 0.77674 0.79399 0.77523 1.21199 1.22186 1.19499 1.19676 0.91535 0.85560 1.41180 0.90721 1.42589 1.05608 1.01292 1.89338 1.20822 0.93779 0.84549 0.97498 1.22715 0.98545 0.94307 0.97275 0.89517 1.23217 0.98886 0.93406 0.99858 1.21772 0.85380 0.94280 0.96834 0.89048 1.45580 1.22991 1.43142 1.22971 1.20337 0.85003 0.77780 0.84352 1.90661 1.73316 1.60091 1.22928 1.22302 0.89770 1.08346 1.01604 1.23024 0.95022 0.98202 1.02384 1.23006 1.00934 0.93103 1.01437 1.23467 1.01187 0.96112 0.97477 0.94014 0.79544 0.96292 0.95926 0.87600 0.88867 0.74795 0.82750 0.90087 0.85048 0.85141 0.89697 0.93186 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.41 5.60 -343.47 -1.92 -40.34 16 10 C 0.16 6.30 6.10 86.38 0.53 6.82 16 11 C -0.11 -3.31 3.64 -10.18 -0.04 -3.35 16 12 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.12 -2.55 7.38 31.12 0.23 -2.32 16 14 C 0.12 3.08 4.32 45.52 0.20 3.28 16 15 H 0.09 2.49 7.47 -2.39 -0.02 2.47 16 16 N -0.70 -15.44 5.26 -440.03 -2.32 -17.75 16 17 C 0.54 13.47 7.61 87.66 0.67 14.13 16 18 O -0.59 -19.92 15.86 -3.01 -0.05 -19.96 16 19 C -0.20 -3.37 6.19 -11.54 -0.07 -3.44 16 20 C -0.15 -2.32 10.23 30.58 0.31 -2.01 16 21 C -0.15 -2.32 10.04 30.58 0.31 -2.02 16 22 C -0.14 -4.37 7.44 31.21 0.23 -4.14 16 23 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 24 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 25 H 0.02 0.76 7.85 -2.38 -0.02 0.74 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 2.17 8.10 -2.39 -0.02 2.15 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.42 7.09 8.70 -92.71 -0.81 6.28 16 30 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.74 7.67 -2.38 -0.02 1.72 16 35 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.08 2.64 7.91 -2.39 -0.02 2.62 16 Total: -1.00 -71.69 305.75 1.25 -70.43 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.44 Total: 29.06 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 3.67 Total: -10.24 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.96 Total: -117.80 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.96 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -71.69 1.25 -70.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283011827.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.839 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds