Wall clock time and date at job start Sun Mar 29 2020 22:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48501 * 109.46993 * 270.00009 * 3 2 1 5 5 H 1.48503 * 109.47196 * 29.99540 * 3 2 1 6 6 H 1.48498 * 109.47015 * 149.99599 * 3 2 1 7 7 C 1.37871 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00133 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47498 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99593 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00308 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99435 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99881 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47260 * 179.97438 * 15 14 12 17 17 C 1.31004 * 119.99903 * 124.99791 * 16 15 14 18 18 C 1.50700 * 119.99903 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49951 * 188.62081 * 18 17 16 20 20 C 1.53001 * 60.00133 * 252.51191 * 19 18 17 21 21 H 0.97000 * 119.99769 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46973 * 59.99788 * 9 7 2 23 23 H 1.08998 * 109.47023 * 300.00295 * 9 7 2 24 24 H 1.09006 * 109.46588 * 60.00010 * 10 9 7 25 25 H 1.08998 * 109.47394 * 300.00276 * 10 9 7 26 26 H 0.96998 * 119.99759 * 0.02562 * 11 10 9 27 27 H 0.96992 * 120.00231 * 359.97438 * 14 12 11 28 28 H 1.08999 * 109.47519 * 59.99345 * 15 14 12 29 29 H 1.09006 * 109.47166 * 300.00083 * 15 14 12 30 30 H 1.07999 * 119.99988 * 304.99717 * 16 15 14 31 31 H 1.07995 * 120.00080 * 359.72973 * 17 16 15 32 32 H 1.09002 * 115.55035 * 334.33088 * 18 17 16 33 33 H 1.09003 * 117.49691 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49743 * 145.01768 * 19 18 17 35 35 H 1.08997 * 117.49807 * 252.51229 * 20 19 18 36 36 H 1.08998 * 117.51752 * 107.47865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0022 12 6 6.1603 -3.8038 0.0026 13 8 5.5523 -4.8567 0.0026 14 7 7.5081 -3.8038 0.0031 15 6 8.2406 -5.0725 0.0030 16 6 9.7222 -4.7971 0.0030 17 6 10.4851 -5.3173 0.9323 18 6 11.9668 -5.0424 0.9319 19 6 12.8324 -5.8339 1.9144 20 6 12.5571 -4.3493 2.1617 21 1 -0.4850 0.8401 -0.0004 22 1 3.8744 -0.6800 0.8911 23 1 3.8751 -0.6804 -0.8888 24 1 3.6584 -3.1509 -0.8876 25 1 3.6578 -3.1498 0.8924 26 1 5.9715 -1.7965 0.0019 27 1 7.9931 -2.9638 0.0028 28 1 7.9775 -5.6439 -0.8872 29 1 7.9769 -5.6443 0.8928 30 1 10.1551 -4.1710 -0.7632 31 1 10.0516 -5.9398 1.7009 32 1 12.3998 -4.8001 -0.0386 33 1 12.3302 -6.5537 2.5607 34 1 13.8351 -6.1127 1.5902 35 1 13.3785 -3.6514 2.0002 36 1 11.8736 -4.0919 2.9707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324644956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:53 Heat of formation + Delta-G solvation = -2.295396 kcal Electronic energy + Delta-G solvation = -15662.036148 eV Core-core repulsion = 12954.026833 eV Total energy + Delta-G solvation = -2708.009315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62577 -38.09902 -35.72269 -34.70284 -32.90824 -32.34559 -29.99278 -26.69493 -24.47203 -22.77116 -21.85749 -20.79642 -20.69266 -19.98292 -17.98370 -16.86866 -16.31211 -15.85019 -15.34637 -15.02287 -14.29047 -14.01242 -13.83300 -13.78176 -13.19743 -12.93056 -12.58053 -12.30083 -11.97978 -11.62017 -11.45480 -11.28550 -11.17877 -10.73836 -10.36533 -10.25155 -9.96621 -9.79877 -9.33644 -9.27202 -8.96612 -8.60730 -8.34309 -6.09055 -4.08905 1.65670 3.13045 3.26575 3.34076 3.35546 3.55553 3.57974 4.17754 4.39418 4.51130 4.60271 4.65165 4.74255 4.87130 5.11011 5.23894 5.23896 5.44032 5.51414 5.62881 5.70566 5.76944 6.11461 6.27774 6.28835 6.36114 6.59040 6.63832 6.85081 7.08114 7.27407 7.33367 7.69780 8.33245 8.48421 8.93444 8.96585 9.51127 11.04044 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043865 B = 0.003294 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.164144 B = 8497.824560 C = 8971.746837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.698 3.302 13 O -0.596 6.596 14 N -0.751 5.751 15 C 0.170 3.830 16 C -0.168 4.168 17 C -0.109 4.109 18 C -0.130 4.130 19 C -0.176 4.176 20 C -0.171 4.171 21 H 0.264 0.736 22 H 0.021 0.979 23 H 0.017 0.983 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.391 0.609 27 H 0.395 0.605 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.877 -6.704 1.874 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.398 3.602 13 O -0.474 6.474 14 N -0.408 5.408 15 C 0.046 3.954 16 C -0.187 4.187 17 C -0.128 4.128 18 C -0.148 4.148 19 C -0.213 4.213 20 C -0.208 4.208 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.224 0.776 27 H 0.228 0.772 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 25.089 -7.579 1.875 26.276 hybrid contribution 0.834 1.736 -0.063 1.927 sum 25.924 -5.843 1.812 26.636 Atomic orbital electron populations 1.69906 1.06284 1.27014 1.50531 1.25004 0.94771 0.99144 0.94425 0.86740 0.80251 0.83534 0.78462 1.20257 1.21313 1.19099 1.20925 0.88663 0.94914 1.51501 0.90574 1.19796 0.97916 0.91461 0.96777 1.21376 0.74786 0.99813 1.01498 1.45518 1.08917 1.06231 1.78943 1.16046 0.81247 0.84847 0.78058 1.90904 1.67744 1.30600 1.58156 1.45107 1.04892 1.09063 1.81711 1.20083 0.87111 0.85683 1.02490 1.22840 0.94717 1.01456 0.99647 1.22305 0.92975 0.99331 0.98148 1.21249 0.92420 1.05670 0.95493 1.22986 1.00839 0.94652 1.02833 1.22969 1.03088 0.95407 0.99372 0.92575 0.96042 0.96466 0.92166 0.92151 0.77584 0.77215 0.90905 0.91475 0.86685 0.86818 0.87302 0.88520 0.88608 0.88525 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.12 5.61 -4.04 -0.02 3.10 16 11 N -0.74 -12.70 5.56 -65.22 -0.36 -13.07 16 12 C 0.70 12.14 8.57 -86.92 -0.74 11.39 16 13 O -0.60 -12.92 16.34 5.29 0.09 -12.83 16 14 N -0.75 -9.39 5.55 -66.42 -0.37 -9.76 16 15 C 0.17 1.89 6.11 -5.20 -0.03 1.86 16 16 C -0.17 -1.39 9.27 -36.03 -0.33 -1.73 16 17 C -0.11 -0.85 9.27 -36.03 -0.33 -1.18 16 18 C -0.13 -0.88 5.99 -91.77 -0.55 -1.43 16 19 C -0.18 -1.05 10.23 -26.73 -0.27 -1.33 16 20 C -0.17 -1.07 10.23 -26.73 -0.27 -1.34 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 23 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 26 H 0.39 5.51 8.49 -40.82 -0.35 5.16 16 27 H 0.39 3.80 8.48 -40.82 -0.35 3.45 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 30 H 0.12 0.84 8.05 -52.49 -0.42 0.41 16 31 H 0.11 0.88 7.84 -52.49 -0.41 0.46 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -33.20 311.05 -8.63 -41.83 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.67 Total: 3.92 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -3.11 Total: -4.51 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.04 Total: -49.59 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.20 -8.63 -41.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324644956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.537 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds