Wall clock time and date at job start Sun Mar 29 2020 22:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48501 * 109.46993 * 270.00009 * 3 2 1 5 5 H 1.48503 * 109.47196 * 29.99540 * 3 2 1 6 6 H 1.48498 * 109.47015 * 149.99599 * 3 2 1 7 7 C 1.37871 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00325 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00133 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47498 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47337 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99593 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00308 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99435 * 180.02562 * 12 11 10 15 15 C 1.46495 * 119.99881 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47260 * 179.97438 * 15 14 12 17 17 C 1.31004 * 119.99903 * 124.99791 * 16 15 14 18 18 C 1.50700 * 119.99903 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49951 * 188.62081 * 18 17 16 20 20 C 1.53001 * 60.00133 * 252.51191 * 19 18 17 21 21 H 0.97000 * 119.99769 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46973 * 59.99788 * 9 7 2 23 23 H 1.08998 * 109.47023 * 300.00295 * 9 7 2 24 24 H 1.09006 * 109.46588 * 60.00010 * 10 9 7 25 25 H 1.08998 * 109.47394 * 300.00276 * 10 9 7 26 26 H 0.96998 * 119.99759 * 0.02562 * 11 10 9 27 27 H 0.96992 * 120.00231 * 359.97438 * 14 12 11 28 28 H 1.08999 * 109.47519 * 59.99345 * 15 14 12 29 29 H 1.09006 * 109.47166 * 300.00083 * 15 14 12 30 30 H 1.07999 * 119.99988 * 304.99717 * 16 15 14 31 31 H 1.07995 * 120.00080 * 359.72973 * 17 16 15 32 32 H 1.09002 * 115.55035 * 334.33088 * 18 17 16 33 33 H 1.09003 * 117.49691 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49743 * 145.01768 * 19 18 17 35 35 H 1.08997 * 117.49807 * 252.51229 * 20 19 18 36 36 H 1.08998 * 117.51752 * 107.47865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0022 12 6 6.1603 -3.8038 0.0026 13 8 5.5523 -4.8567 0.0026 14 7 7.5081 -3.8038 0.0031 15 6 8.2406 -5.0725 0.0030 16 6 9.7222 -4.7971 0.0030 17 6 10.4851 -5.3173 0.9323 18 6 11.9668 -5.0424 0.9319 19 6 12.8324 -5.8339 1.9144 20 6 12.5571 -4.3493 2.1617 21 1 -0.4850 0.8401 -0.0004 22 1 3.8744 -0.6800 0.8911 23 1 3.8751 -0.6804 -0.8888 24 1 3.6584 -3.1509 -0.8876 25 1 3.6578 -3.1498 0.8924 26 1 5.9715 -1.7965 0.0019 27 1 7.9931 -2.9638 0.0028 28 1 7.9775 -5.6439 -0.8872 29 1 7.9769 -5.6443 0.8928 30 1 10.1551 -4.1710 -0.7632 31 1 10.0516 -5.9398 1.7009 32 1 12.3998 -4.8001 -0.0386 33 1 12.3302 -6.5537 2.5607 34 1 13.8351 -6.1127 1.5902 35 1 13.3785 -3.6514 2.0002 36 1 11.8736 -4.0919 2.9707 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324644956.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:53 Heat of formation + Delta-G solvation = -25.578760 kcal Electronic energy + Delta-G solvation = -15663.045791 eV Core-core repulsion = 12954.026833 eV Total energy + Delta-G solvation = -2709.018958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99740 -38.65764 -36.95532 -36.16421 -34.80191 -33.45663 -31.75694 -27.84856 -26.16168 -23.21928 -22.78081 -22.40573 -22.02265 -20.70097 -19.33277 -18.87680 -17.33818 -16.91563 -16.44911 -16.29884 -15.80476 -15.39841 -15.28050 -15.01568 -14.58715 -14.30781 -13.73882 -13.33323 -13.12897 -12.96211 -12.42539 -12.20521 -12.16985 -12.13884 -11.87029 -11.74813 -11.54374 -11.35379 -11.19245 -10.77737 -10.41546 -9.90690 -9.64585 -8.28811 -6.36151 0.96998 1.40236 1.43162 1.54472 1.92176 2.15701 2.38205 3.06192 3.07585 3.43767 3.59613 4.03928 4.07635 4.17137 4.25810 4.36608 4.44216 4.46772 4.65184 4.77021 4.77479 4.81505 5.04767 5.16283 5.25012 5.27182 5.42756 5.43367 5.45800 5.66308 5.67715 5.79709 6.05342 6.24581 6.71259 7.15120 7.28271 7.59877 8.88062 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.043865 B = 0.003294 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.164144 B = 8497.824560 C = 8971.746837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.731 5.731 12 C 0.695 3.305 13 O -0.643 6.643 14 N -0.728 5.728 15 C 0.170 3.830 16 C -0.168 4.168 17 C -0.102 4.102 18 C -0.139 4.139 19 C -0.176 4.176 20 C -0.171 4.171 21 H 0.268 0.732 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.411 0.589 27 H 0.413 0.587 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.298 -5.026 1.903 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.395 3.605 13 O -0.525 6.525 14 N -0.385 5.385 15 C 0.046 3.954 16 C -0.187 4.187 17 C -0.121 4.121 18 C -0.157 4.157 19 C -0.212 4.212 20 C -0.208 4.208 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.247 0.753 27 H 0.249 0.751 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 28.594 -5.888 1.906 29.256 hybrid contribution -0.243 1.083 -0.045 1.111 sum 28.351 -4.805 1.861 28.816 Atomic orbital electron populations 1.70080 1.08610 1.28430 1.52012 1.26103 0.95717 1.03941 0.93675 0.85506 0.79645 0.77184 0.79319 1.18974 1.21310 1.15911 1.21259 0.91611 0.93393 1.51527 0.95338 1.19641 0.94334 0.92807 0.98110 1.20882 0.77193 0.98287 0.99727 1.45114 1.07271 1.07304 1.78968 1.16211 0.82567 0.83959 0.77765 1.90878 1.69152 1.32288 1.60210 1.44938 1.03101 1.10673 1.79821 1.20144 0.88833 0.84795 1.01614 1.22649 0.92667 1.02666 1.00684 1.22431 0.93757 0.98386 0.97526 1.21294 0.91658 1.06522 0.96225 1.23076 1.01227 0.94594 1.02342 1.23031 1.03217 0.95821 0.98757 0.92334 0.94436 0.94532 0.94097 0.94138 0.75316 0.75064 0.91831 0.92534 0.85053 0.87101 0.86447 0.88586 0.87509 0.87456 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.44 0.30 -59.40 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.96 42.38 27.47 68.60 1.88 44.27 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.54 -31.12 9.66 25.60 0.25 -30.87 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 10 C 0.16 6.89 5.61 86.38 0.48 7.38 16 11 N -0.73 -23.80 5.56 -478.52 -2.66 -26.46 16 12 C 0.70 23.49 8.57 179.05 1.53 25.02 16 13 O -0.64 -28.20 16.34 -3.98 -0.07 -28.26 16 14 N -0.73 -16.83 5.55 -482.30 -2.68 -19.51 16 15 C 0.17 3.57 6.11 85.63 0.52 4.09 16 16 C -0.17 -2.42 9.27 25.64 0.24 -2.18 16 17 C -0.10 -1.39 9.27 25.64 0.24 -1.15 16 18 C -0.14 -1.55 5.99 -11.54 -0.07 -1.62 16 19 C -0.18 -1.72 10.23 30.59 0.31 -1.41 16 20 C -0.17 -1.74 10.23 30.60 0.31 -1.43 16 21 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 23 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 24 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.41 10.20 8.49 -92.71 -0.79 9.41 16 27 H 0.41 6.66 8.48 -92.71 -0.79 5.88 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.32 7.79 -2.38 -0.02 1.30 16 30 H 0.13 1.50 8.05 -2.91 -0.02 1.48 16 31 H 0.11 1.56 7.84 -2.91 -0.02 1.54 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.73 311.05 0.63 -73.10 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.56 Total: 18.21 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 4.41 Total: -1.95 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.04 Total: -105.37 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.07 Total: -28.26 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Total: -73.73 0.63 -73.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324644956.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.517 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds