Wall clock time and date at job start Sun Mar 29 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86800 * 119.99636 * 2 1 4 4 H 1.48501 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46895 * 299.99654 * 3 2 1 6 6 H 1.48506 * 109.47414 * 59.99495 * 3 2 1 7 7 C 1.40044 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99750 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00173 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99952 * 179.97438 * 11 9 7 13 13 C 1.53123 * 109.57501 * 85.29823 * 12 11 9 14 14 C 1.53034 * 109.27992 * 177.60191 * 13 12 11 15 15 N 1.46847 * 109.51345 * 300.80438 * 14 13 12 16 16 C 1.46895 * 110.99982 * 185.84805 * 15 14 13 17 17 C 1.53001 * 117.49790 * 248.62113 * 16 15 14 18 18 C 1.53006 * 60.00157 * 252.50752 * 17 16 15 19 19 C 1.46843 * 111.20124 * 61.74903 * 15 14 13 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 15 14 21 21 H 0.96996 * 120.00624 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99908 * 359.97438 * 11 9 7 23 23 H 1.09003 * 109.52476 * 325.12928 * 12 11 9 24 24 H 1.08997 * 109.51083 * 57.64785 * 13 12 11 25 25 H 1.08998 * 109.48980 * 297.53716 * 13 12 11 26 26 H 1.09002 * 109.46271 * 180.79158 * 14 13 12 27 27 H 1.08994 * 109.46242 * 60.81457 * 14 13 12 28 28 H 1.09002 * 115.55182 * 34.32677 * 16 15 14 29 29 H 1.08993 * 117.50121 * 359.97438 * 17 16 15 30 30 H 1.08996 * 117.49842 * 145.02062 * 17 16 15 31 31 H 1.08995 * 117.50070 * 252.51168 * 18 17 16 32 32 H 1.08994 * 117.49688 * 107.48335 * 18 17 16 33 33 H 1.08993 * 109.46313 * 58.27251 * 19 15 14 34 34 H 1.09000 * 109.46480 * 178.25361 * 19 15 14 35 35 H 1.08997 * 109.50758 * 179.11703 * 20 19 15 36 36 H 1.08998 * 109.50897 * 299.20258 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3466 -0.0006 5 1 1.8818 2.3964 -1.2126 6 1 1.8817 2.3966 1.2125 7 6 2.0070 -1.2127 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0011 13 6 0.8573 -5.3019 -1.4365 14 6 0.1455 -6.6566 -1.4335 15 7 1.0257 -7.6719 -0.8412 16 6 0.4310 -9.0108 -0.9473 17 6 -0.0257 -9.6856 0.3477 18 6 1.2273 -10.1850 -0.3745 19 6 1.3465 -7.3476 0.5546 20 6 2.0939 -6.0133 0.6110 21 1 -0.4851 0.8400 -0.0004 22 1 2.9192 -3.6475 0.0002 23 1 0.3049 -4.8103 0.5888 24 1 1.7667 -5.3699 -2.0334 25 1 0.1979 -4.5453 -1.8619 26 1 -0.0993 -6.9405 -2.4570 27 1 -0.7708 -6.5841 -0.8477 28 1 -0.1590 -9.1934 -1.8455 29 1 0.1155 -9.1362 1.2783 30 1 -0.9164 -10.3121 0.3016 31 1 1.1609 -11.1401 -0.8955 32 1 2.1925 -9.9639 0.0811 33 1 0.4245 -7.2720 1.1309 34 1 1.9742 -8.1334 0.9750 35 1 2.3181 -5.7653 1.6484 36 1 3.0232 -6.0926 0.0468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325493589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:49 Heat of formation + Delta-G solvation = -13.965898 kcal Electronic energy + Delta-G solvation = -17119.925382 eV Core-core repulsion = 14411.409995 eV Total energy + Delta-G solvation = -2708.515386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58109 -37.49096 -35.65834 -32.98200 -32.21980 -30.62042 -29.56676 -26.22640 -23.85955 -22.79206 -22.47552 -20.75898 -19.51142 -19.28395 -17.06703 -16.68092 -15.45791 -15.30856 -14.76500 -14.17990 -14.03193 -13.75456 -13.67169 -12.87590 -12.45622 -12.32412 -11.99312 -11.79966 -11.60784 -11.42124 -11.06944 -10.98939 -10.83853 -10.68253 -10.43496 -10.40018 -10.21838 -10.14068 -9.91377 -8.83828 -8.08380 -7.57068 -7.44693 -6.15978 -4.61269 3.14313 3.22568 3.27078 3.61563 4.01378 4.12840 4.61024 4.71653 4.81275 4.84074 4.93724 5.03799 5.29673 5.44089 5.52531 5.58029 5.61200 5.66091 5.81457 5.89535 5.91804 5.98898 6.01515 6.03809 6.11122 6.31657 6.45604 6.70601 6.87939 7.16212 7.21312 7.45942 7.98053 8.16577 8.37575 9.05414 9.59028 10.63153 10.82405 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.068982 B = 0.004721 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.804691 B = 5929.670330 C = 6064.017772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.156 3.844 13 C -0.124 4.124 14 C 0.062 3.938 15 N -0.506 5.506 16 C 0.026 3.974 17 C -0.224 4.224 18 C -0.174 4.174 19 C 0.057 3.943 20 C -0.123 4.123 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -15.223 -0.518 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.050 3.950 13 C -0.164 4.164 14 C -0.066 4.066 15 N -0.229 5.229 16 C -0.084 4.084 17 C -0.263 4.263 18 C -0.212 4.212 19 C -0.071 4.071 20 C -0.161 4.161 21 H 0.078 0.922 22 H 0.211 0.789 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.347 -15.061 -0.785 15.263 hybrid contribution 0.171 0.723 0.445 0.866 sum 2.518 -14.338 -0.339 14.561 Atomic orbital electron populations 1.70028 1.07040 1.27060 1.35647 1.25698 0.94590 1.00252 0.92623 0.86343 0.80522 0.81862 0.78169 1.18794 1.20199 1.20210 1.20941 0.93608 0.89487 1.54260 0.91452 1.18221 0.87224 0.82516 0.76150 1.90589 1.14085 1.86859 1.54894 1.46165 1.08422 1.04697 1.82295 1.20487 0.95577 0.84302 0.94682 1.22022 1.00881 0.94604 0.98883 1.22095 0.93875 0.91686 0.98970 1.61839 1.43021 1.00253 1.17777 1.22657 1.00575 0.88447 0.96726 1.23555 0.98837 1.05570 0.98367 1.23044 0.96094 0.97946 1.04087 1.22145 0.99028 0.97429 0.88507 1.21882 0.99406 0.93552 1.01261 0.92242 0.78925 0.91145 0.91676 0.90689 0.90987 0.94608 0.86501 0.88289 0.89035 0.88710 0.88630 0.94341 0.90874 0.91262 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -15.53 9.54 -35.63 -0.34 -15.87 16 8 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 9 C 0.56 15.83 7.72 -12.99 -0.10 15.73 16 10 O -0.58 -18.80 14.68 5.20 0.08 -18.73 16 11 N -0.76 -17.14 5.08 -55.09 -0.28 -17.42 16 12 C 0.16 3.03 2.52 -67.80 -0.17 2.85 16 13 C -0.12 -2.25 5.68 -26.65 -0.15 -2.40 16 14 C 0.06 0.92 5.44 -3.84 -0.02 0.90 16 15 N -0.51 -6.88 4.88 -226.70 -1.11 -7.98 16 16 C 0.03 0.29 6.11 -67.71 -0.41 -0.12 16 17 C -0.22 -2.27 9.58 -26.73 -0.26 -2.53 16 18 C -0.17 -1.69 9.94 -26.72 -0.27 -1.95 16 19 C 0.06 0.76 4.12 -3.83 -0.02 0.74 16 20 C -0.12 -1.85 5.57 -26.64 -0.15 -2.00 16 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 22 H 0.38 7.59 8.58 -40.82 -0.35 7.24 16 23 H 0.07 1.57 7.58 -51.93 -0.39 1.18 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 26 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.12 1.21 8.04 -51.93 -0.42 0.79 16 29 H 0.10 1.05 5.97 -51.93 -0.31 0.74 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.95 7.23 -51.93 -0.38 0.58 16 33 H 0.04 0.53 7.12 -51.93 -0.37 0.16 16 34 H 0.07 0.86 6.42 -51.93 -0.33 0.53 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -33.16 291.19 -8.74 -41.90 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.47 Total: 7.41 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.98 Total: -2.27 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.73 Total: -47.95 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.73 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.16 -8.74 -41.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325493589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.939 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds