Wall clock time and date at job start Sun Mar 29 2020 22:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86800 * 119.99636 * 2 1 4 4 H 1.48501 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46895 * 299.99654 * 3 2 1 6 6 H 1.48506 * 109.47414 * 59.99495 * 3 2 1 7 7 C 1.40044 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99945 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99750 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00173 * 179.97438 * 9 7 2 12 12 C 1.46500 * 119.99952 * 179.97438 * 11 9 7 13 13 C 1.53123 * 109.57501 * 85.29823 * 12 11 9 14 14 C 1.53034 * 109.27992 * 177.60191 * 13 12 11 15 15 N 1.46847 * 109.51345 * 300.80438 * 14 13 12 16 16 C 1.46895 * 110.99982 * 185.84805 * 15 14 13 17 17 C 1.53001 * 117.49790 * 248.62113 * 16 15 14 18 18 C 1.53006 * 60.00157 * 252.50752 * 17 16 15 19 19 C 1.46843 * 111.20124 * 61.74903 * 15 14 13 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 15 14 21 21 H 0.96996 * 120.00624 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99908 * 359.97438 * 11 9 7 23 23 H 1.09003 * 109.52476 * 325.12928 * 12 11 9 24 24 H 1.08997 * 109.51083 * 57.64785 * 13 12 11 25 25 H 1.08998 * 109.48980 * 297.53716 * 13 12 11 26 26 H 1.09002 * 109.46271 * 180.79158 * 14 13 12 27 27 H 1.08994 * 109.46242 * 60.81457 * 14 13 12 28 28 H 1.09002 * 115.55182 * 34.32677 * 16 15 14 29 29 H 1.08993 * 117.50121 * 359.97438 * 17 16 15 30 30 H 1.08996 * 117.49842 * 145.02062 * 17 16 15 31 31 H 1.08995 * 117.50070 * 252.51168 * 18 17 16 32 32 H 1.08994 * 117.49688 * 107.48335 * 18 17 16 33 33 H 1.08993 * 109.46313 * 58.27251 * 19 15 14 34 34 H 1.09000 * 109.46480 * 178.25361 * 19 15 14 35 35 H 1.08997 * 109.50758 * 179.11703 * 20 19 15 36 36 H 1.08998 * 109.50897 * 299.20258 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7006 1.3466 -0.0006 5 1 1.8818 2.3964 -1.2126 6 1 1.8817 2.3966 1.2125 7 6 2.0070 -1.2127 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9492 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0011 13 6 0.8573 -5.3019 -1.4365 14 6 0.1455 -6.6566 -1.4335 15 7 1.0257 -7.6719 -0.8412 16 6 0.4310 -9.0108 -0.9473 17 6 -0.0257 -9.6856 0.3477 18 6 1.2273 -10.1850 -0.3745 19 6 1.3465 -7.3476 0.5546 20 6 2.0939 -6.0133 0.6110 21 1 -0.4851 0.8400 -0.0004 22 1 2.9192 -3.6475 0.0002 23 1 0.3049 -4.8103 0.5888 24 1 1.7667 -5.3699 -2.0334 25 1 0.1979 -4.5453 -1.8619 26 1 -0.0993 -6.9405 -2.4570 27 1 -0.7708 -6.5841 -0.8477 28 1 -0.1590 -9.1934 -1.8455 29 1 0.1155 -9.1362 1.2783 30 1 -0.9164 -10.3121 0.3016 31 1 1.1609 -11.1401 -0.8955 32 1 2.1925 -9.9639 0.0811 33 1 0.4245 -7.2720 1.1309 34 1 1.9742 -8.1334 0.9750 35 1 2.3181 -5.7653 1.6484 36 1 3.0232 -6.0926 0.0468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325493589.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:49 Heat of formation + Delta-G solvation = -38.554625 kcal Electronic energy + Delta-G solvation = -17120.991629 eV Core-core repulsion = 14411.409995 eV Total energy + Delta-G solvation = -2709.581634 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78887 -39.27515 -37.12137 -34.79042 -34.19412 -31.91248 -31.13379 -28.28952 -25.19368 -24.11778 -23.26972 -22.11882 -21.31702 -20.62470 -19.05849 -17.71935 -17.43749 -16.61642 -16.18773 -15.95698 -15.30642 -15.19957 -14.97671 -14.45943 -14.24075 -13.91022 -13.38407 -13.14469 -12.98602 -12.80164 -12.63810 -12.54068 -12.45433 -12.00579 -11.98381 -11.68242 -11.64302 -11.50439 -11.12742 -10.94240 -9.83156 -9.43461 -9.11607 -8.28415 -6.85067 1.40131 1.40274 1.58326 2.24925 2.48129 2.66111 3.04670 3.18394 3.60338 3.77654 3.82548 3.99221 4.09399 4.11374 4.22611 4.28467 4.39856 4.50949 4.63789 4.68788 4.78015 4.79608 4.85615 4.99499 5.10024 5.12053 5.23521 5.27456 5.32207 5.33963 5.89894 6.05453 6.13268 6.26199 6.32658 6.87551 7.58353 8.51331 8.68882 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.068982 B = 0.004721 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.804691 B = 5929.670330 C = 6064.017772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.632 6.632 11 N -0.750 5.750 12 C 0.153 3.847 13 C -0.116 4.116 14 C 0.071 3.929 15 N -0.509 5.509 16 C 0.005 3.995 17 C -0.222 4.222 18 C -0.158 4.158 19 C 0.061 3.939 20 C -0.110 4.110 21 H 0.274 0.726 22 H 0.394 0.606 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.090 0.910 27 H 0.023 0.977 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -16.310 -0.544 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.611 4.611 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.519 6.519 11 N -0.403 5.403 12 C 0.047 3.953 13 C -0.156 4.156 14 C -0.057 4.057 15 N -0.232 5.232 16 C -0.104 4.104 17 C -0.261 4.261 18 C -0.196 4.196 19 C -0.067 4.067 20 C -0.149 4.149 21 H 0.083 0.917 22 H 0.228 0.772 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.041 0.959 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.417 -16.213 -0.809 16.824 hybrid contribution -0.479 0.970 0.457 1.175 sum 3.938 -15.243 -0.351 15.747 Atomic orbital electron populations 1.70196 1.09555 1.28804 1.36727 1.26974 0.95508 1.04970 0.91191 0.84967 0.79361 0.75402 0.78501 1.16971 1.19386 1.19348 1.21485 0.94728 0.90201 1.54707 0.89515 1.18607 0.86861 0.84413 0.75872 1.90544 1.16214 1.87964 1.57191 1.45867 1.09113 1.04551 1.80801 1.20642 0.94852 0.84314 0.95443 1.21861 1.00561 0.95539 0.97608 1.21928 0.93121 0.90522 1.00111 1.61844 1.42814 1.00922 1.17596 1.22801 1.02197 0.87523 0.97920 1.23587 0.99862 1.05347 0.97346 1.23127 0.95702 0.97741 1.03005 1.22139 0.98926 0.96935 0.88703 1.21789 0.99028 0.92707 1.01333 0.91650 0.77237 0.94962 0.90914 0.94781 0.89195 0.95851 0.85573 0.88926 0.87840 0.86801 0.88584 0.95095 0.88313 0.90621 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.24 11.83 21.83 0.26 -50.98 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 41.50 29.56 68.60 2.03 43.53 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.57 -33.14 9.54 24.83 0.24 -32.90 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.54 31.89 7.72 86.36 0.67 32.55 16 10 O -0.63 -43.18 14.68 -4.31 -0.06 -43.24 16 11 N -0.75 -34.54 5.08 -446.42 -2.27 -36.81 16 12 C 0.15 6.12 2.52 45.07 0.11 6.23 16 13 C -0.12 -4.33 5.68 30.65 0.17 -4.16 16 14 C 0.07 2.12 5.44 86.32 0.47 2.59 16 15 N -0.51 -12.96 4.88 -871.13 -4.25 -17.20 16 16 C 0.00 0.09 6.11 44.92 0.27 0.37 16 17 C -0.22 -3.95 9.58 30.60 0.29 -3.65 16 18 C -0.16 -2.53 9.94 30.60 0.30 -2.23 16 19 C 0.06 1.53 4.12 86.33 0.36 1.88 16 20 C -0.11 -3.21 5.57 30.65 0.17 -3.04 16 21 H 0.27 15.37 8.29 -92.71 -0.77 14.61 16 22 H 0.39 15.67 8.58 -92.71 -0.80 14.87 16 23 H 0.03 1.53 7.58 -2.39 -0.02 1.51 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 2.34 8.07 -2.39 -0.02 2.32 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 28 H 0.13 2.31 8.04 -2.39 -0.02 2.29 16 29 H 0.09 1.78 5.97 -2.39 -0.01 1.77 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.56 7.23 -2.39 -0.02 1.55 16 33 H 0.03 0.83 7.12 -2.39 -0.02 0.81 16 34 H 0.10 2.02 6.42 -2.39 -0.02 2.01 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -75.07 291.19 -0.49 -75.56 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.28 Total: 29.43 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 3.53 Total: -0.28 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -6.26 Total: -104.99 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.06 Total: -43.24 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -75.07 -0.49 -75.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325493589.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.001 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds