Wall clock time and date at job start Sun Mar 29 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99699 * 2 1 4 4 H 1.48502 * 109.47156 * 270.00164 * 3 2 1 5 5 H 1.48501 * 109.47408 * 29.99843 * 3 2 1 6 6 H 1.48504 * 109.47134 * 150.00081 * 3 2 1 7 7 C 1.37879 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99840 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47195 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99563 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00509 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99800 * 180.02562 * 12 11 10 15 15 H 1.08997 * 109.35489 * 60.27734 * 14 12 11 16 16 C 1.52879 * 109.35400 * 300.69228 * 14 12 11 17 17 C 1.53300 * 108.57833 * 185.27051 * 16 14 12 18 18 C 1.52869 * 108.59233 * 74.44471 * 17 16 14 19 19 C 1.52074 * 110.51259 * 305.10693 * 18 17 16 20 20 H 1.09000 * 114.26378 * 166.23067 * 19 18 17 21 21 C 1.52306 * 119.84043 * 310.45222 * 19 18 17 22 22 C 1.52071 * 120.01813 * 21.70333 * 19 18 17 23 23 H 1.08999 * 117.25275 * 143.33643 * 22 19 18 24 24 H 0.97002 * 120.00819 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99601 * 9 7 2 26 26 H 1.09005 * 109.47309 * 299.99774 * 9 7 2 27 27 H 1.09005 * 109.46566 * 59.99865 * 10 9 7 28 28 H 1.08997 * 109.46951 * 300.00403 * 10 9 7 29 29 H 1.09000 * 109.62183 * 304.99505 * 16 14 12 30 30 H 1.09002 * 109.61875 * 65.54047 * 16 14 12 31 31 H 1.09004 * 109.61494 * 194.17568 * 17 16 14 32 32 H 1.09001 * 109.61664 * 314.71083 * 17 16 14 33 33 H 1.09004 * 109.26821 * 184.84298 * 18 17 16 34 34 H 1.08998 * 109.26836 * 65.37850 * 18 17 16 35 35 H 1.08997 * 117.53302 * 217.19744 * 21 19 18 36 36 H 1.09002 * 117.53856 * 2.36498 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 8 5.4737 -2.6363 -0.0035 12 6 6.0830 -3.8323 -0.0051 13 8 5.4251 -4.8456 -0.0051 14 6 7.5880 -3.9111 -0.0058 15 1 7.9758 -3.4219 0.8877 16 6 8.1320 -3.2009 -1.2456 17 6 9.6504 -3.4049 -1.2985 18 6 9.9342 -4.8423 -1.7347 19 6 9.2215 -5.8270 -0.8209 20 1 9.1828 -6.8466 -1.2045 21 6 9.3508 -5.6887 0.6903 22 6 8.0181 -5.3763 -0.0077 23 1 7.2074 -6.0930 0.1232 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6802 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.6579 -3.1496 -0.8925 28 1 3.6586 -3.1508 0.8874 29 1 7.6746 -3.6239 -2.1400 30 1 7.9076 -2.1359 -1.1853 31 1 10.0880 -2.7113 -2.0166 32 1 10.0777 -3.2310 -0.3108 33 1 11.0080 -5.0254 -1.6931 34 1 9.5852 -4.9833 -2.7576 35 1 9.4097 -6.6055 1.2770 36 1 9.9304 -4.8480 1.0717 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328011545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:23 Heat of formation + Delta-G solvation = -106.063662 kcal Electronic energy + Delta-G solvation = -16797.495145 eV Core-core repulsion = 14052.693349 eV Total energy + Delta-G solvation = -2744.801796 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86630 -40.07803 -37.70740 -35.43025 -34.16226 -32.91677 -32.10036 -27.48899 -26.18473 -23.62210 -23.36159 -22.53259 -21.49328 -19.38048 -19.26589 -18.48355 -17.81011 -17.58391 -16.39690 -16.20317 -15.36478 -15.23188 -14.90403 -14.79209 -14.43580 -14.23386 -13.77426 -13.34867 -13.17319 -12.97505 -12.60419 -12.48374 -12.36519 -12.17403 -11.87906 -11.82321 -11.57388 -11.47729 -11.33374 -11.24085 -10.82637 -10.77361 -10.61789 -8.35800 -6.44583 1.14102 1.37649 1.39561 1.52366 1.68023 2.33679 2.79644 2.98988 3.47804 3.59694 3.77950 3.93733 4.12181 4.12725 4.18142 4.18736 4.25537 4.38346 4.50303 4.56807 4.61124 4.82565 4.92545 5.01923 5.05214 5.14665 5.18513 5.26181 5.26286 5.31812 5.38840 5.45343 5.49121 5.56462 6.13780 6.61333 6.69625 7.20700 8.80455 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045942 B = 0.004675 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.319944 B = 5987.438911 C = 6377.012890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.546 4.546 8 H 0.033 0.967 9 C -0.002 4.002 10 C 0.092 3.908 11 O -0.357 6.357 12 C 0.457 3.543 13 O -0.545 6.545 14 C -0.038 4.038 15 H 0.128 0.872 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.091 4.091 19 C -0.130 4.130 20 H 0.102 0.898 21 C -0.161 4.161 22 C -0.172 4.172 23 H 0.094 0.906 24 H 0.271 0.729 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.189 -6.322 -1.508 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.051 0.949 9 C -0.039 4.039 10 C 0.018 3.982 11 O -0.274 6.274 12 C 0.302 3.698 13 O -0.436 6.436 14 C -0.057 4.057 15 H 0.145 0.855 16 C -0.150 4.150 17 C -0.151 4.151 18 C -0.128 4.128 19 C -0.148 4.148 20 H 0.121 0.879 21 C -0.198 4.198 22 C -0.190 4.190 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 24.798 -6.502 -1.505 25.680 hybrid contribution -1.095 0.173 0.077 1.111 sum 23.703 -6.330 -1.428 24.575 Atomic orbital electron populations 1.70042 1.08388 1.28703 1.51283 1.25973 0.95679 1.03653 0.93292 0.85580 0.79527 0.77496 0.79622 1.18662 1.20513 1.16672 1.21122 0.90777 0.93789 1.52639 0.94874 1.19451 0.94115 0.91802 0.98541 1.22942 0.74438 0.99915 1.00865 1.86472 1.24197 1.33525 1.83169 1.24547 0.93500 0.80813 0.70962 1.90597 1.68345 1.37525 1.47110 1.20642 0.84182 0.97395 1.03486 0.85468 1.21620 0.97860 1.00577 0.94921 1.21613 0.93144 0.97084 1.03265 1.20947 1.00731 0.93032 0.98133 1.21987 0.98373 1.00783 0.93629 0.87949 1.23253 0.97476 1.04218 0.94833 1.22041 0.93228 0.94596 1.09165 0.88788 0.91993 0.94533 0.94635 0.92768 0.92709 0.92290 0.90103 0.89494 0.90299 0.89314 0.91398 0.88033 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.96 43.45 27.47 68.60 1.88 45.34 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.55 -32.04 9.66 25.60 0.25 -31.80 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.08 4.42 29.85 0.13 0.05 16 10 C 0.09 4.07 5.40 71.98 0.39 4.46 16 11 O -0.36 -13.54 10.13 -51.38 -0.52 -14.06 16 12 C 0.46 15.69 7.25 71.24 0.52 16.20 16 13 O -0.55 -22.26 15.05 21.97 0.33 -21.93 16 14 C -0.04 -0.90 2.56 -11.68 -0.03 -0.93 16 15 H 0.13 2.48 8.06 -2.39 -0.02 2.46 16 16 C -0.11 -2.21 5.11 30.65 0.16 -2.05 16 17 C -0.11 -1.48 5.70 30.65 0.17 -1.31 16 18 C -0.09 -1.16 5.93 30.25 0.18 -0.99 16 19 C -0.13 -2.10 6.00 -11.63 -0.07 -2.17 16 20 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 21 C -0.16 -2.45 9.66 30.58 0.30 -2.15 16 22 C -0.17 -3.79 5.51 -10.98 -0.06 -3.85 16 23 H 0.09 2.64 6.75 -2.39 -0.02 2.62 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.04 1.70 7.20 -2.39 -0.02 1.69 16 26 H 0.04 1.63 7.57 -2.38 -0.02 1.61 16 27 H 0.05 2.47 8.13 -2.38 -0.02 2.45 16 28 H 0.05 2.50 8.13 -2.39 -0.02 2.48 16 29 H 0.06 1.30 8.04 -2.39 -0.02 1.28 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 0.87 7.11 -2.39 -0.02 0.85 16 33 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.36 7.26 -2.39 -0.02 1.34 16 Total: -1.00 -69.18 293.46 5.38 -63.80 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.99 Total: 9.04 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 2.39 Total: -23.36 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.30 Total: -58.83 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.19 Total: -35.99 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Total: -69.18 5.38 -63.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328011545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.266 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds