Wall clock time and date at job start Sun Mar 29 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 2 16 16 C 1.50696 * 109.46969 * 179.97438 * 15 14 12 17 17 C 1.35342 * 126.91770 * 274.68378 * 16 15 14 18 18 N 1.33773 * 106.50144 * 179.90540 * 17 16 15 19 19 N 1.28632 * 108.88379 * 0.37274 * 18 17 16 20 20 N 1.28723 * 110.17619 * 359.76147 * 19 18 17 21 21 H 0.97000 * 125.86339 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 23 23 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 24 24 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 25 25 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 26 26 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 27 27 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46564 * 299.73030 * 14 12 2 29 29 H 1.08998 * 109.47012 * 59.72084 * 14 12 2 30 30 H 1.09000 * 109.46986 * 300.00089 * 15 14 12 31 31 H 1.09002 * 109.46857 * 60.00224 * 15 14 12 32 32 H 1.08008 * 126.75273 * 0.04430 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0081 16 6 1.6261 -4.9403 -0.0074 17 6 1.1484 -5.6026 1.0718 18 7 0.5504 -6.7053 0.6069 19 7 0.6581 -6.7284 -0.6747 20 7 1.2963 -5.6887 -1.0854 21 1 1.5046 -5.4778 -2.0090 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1498 1.1385 0.5139 27 1 4.0293 4.4445 -0.8502 28 1 0.7627 -2.5323 0.8921 29 1 0.7546 -2.5277 -0.8877 30 1 3.0022 -3.5751 -0.9007 31 1 3.0102 -3.5798 0.8793 32 1 1.2314 -5.2994 2.1051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329700317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:34 Heat of formation + Delta-G solvation = 49.492726 kcal Electronic energy + Delta-G solvation = -16360.812658 eV Core-core repulsion = 13551.508700 eV Total energy + Delta-G solvation = -2809.303957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.42351 -39.13131 -35.06711 -34.34857 -33.26649 -32.64102 -30.11174 -27.87989 -26.03904 -24.85201 -23.09601 -22.58616 -21.53371 -18.50159 -18.33432 -16.63364 -16.45487 -16.13283 -15.41738 -15.26239 -14.47323 -14.29906 -14.00039 -13.55043 -12.73655 -12.35089 -12.31610 -12.15525 -11.91646 -11.74759 -11.36616 -11.23795 -10.95052 -10.89163 -10.71625 -10.61465 -10.21943 -9.71274 -9.37723 -8.96426 -8.48965 -7.73310 -6.09952 -4.15294 1.40739 2.41304 2.60098 3.26814 3.28884 3.32172 3.36209 3.83633 4.34451 4.41463 4.59628 4.84397 4.96712 5.14182 5.21683 5.26446 5.33670 5.46547 5.66485 5.83868 5.92528 5.94023 6.03954 6.14576 6.67830 6.97608 7.37105 7.45239 7.85594 8.16732 8.30032 8.32315 8.82245 8.98882 9.49959 10.98119 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.004701 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.875001 B = 5954.264437 C = 6156.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.601 5.601 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.503 3.497 13 O -0.543 6.543 14 C -0.135 4.135 15 C -0.035 4.035 16 C 0.002 3.998 17 C -0.050 4.050 18 N -0.268 5.268 19 N -0.089 5.089 20 N -0.390 5.390 21 H 0.448 0.552 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -12.581 1.073 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.289 3.711 13 O -0.421 6.421 14 C -0.176 4.176 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.207 4.207 18 N -0.135 5.135 19 N -0.069 5.069 20 N -0.111 5.111 21 H 0.293 0.707 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.331 -13.736 0.846 15.148 hybrid contribution 0.705 1.608 -1.310 2.191 sum -5.626 -12.128 -0.464 13.377 Atomic orbital electron populations 1.21654 0.81384 1.02582 1.00546 1.48168 1.06219 1.07911 1.71015 1.19305 0.92583 0.78064 0.97521 1.21372 1.36790 1.06373 0.92225 0.92591 1.24934 0.95309 0.96358 0.97448 1.69920 1.38220 1.14332 1.30817 0.86558 0.78358 0.77884 0.84603 1.20256 1.21104 1.20206 1.20204 0.88065 0.85054 0.77735 1.90684 1.13812 1.87254 1.50350 1.21693 0.98911 0.92859 1.04179 1.19933 0.95997 0.85388 1.06158 1.22484 1.04950 0.98520 0.87252 1.23443 1.02949 0.93757 1.00599 1.75076 1.18102 1.19422 1.00932 1.78268 1.14058 1.07073 1.07521 1.45159 1.38604 1.16190 1.11175 0.70663 0.93577 0.90726 0.92524 0.94968 0.93757 0.92588 0.88886 0.89559 0.89418 0.87747 0.79172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.25 59.84 0.61 1.82 16 2 N -0.60 -11.94 2.86 -182.95 -0.52 -12.47 16 3 C 0.24 6.18 5.16 -5.19 -0.03 6.15 16 4 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.50 9.38 7.67 -10.98 -0.08 9.30 16 13 O -0.54 -12.47 15.56 5.56 0.09 -12.38 16 14 C -0.14 -1.65 4.24 -27.88 -0.12 -1.76 16 15 C -0.03 -0.38 5.07 -27.89 -0.14 -0.52 16 16 C 0.00 0.02 6.56 -82.09 -0.54 -0.52 16 17 C -0.05 -0.55 11.99 -17.74 -0.21 -0.76 16 18 N -0.27 -3.60 12.41 30.24 0.38 -3.22 16 19 N -0.09 -1.13 13.38 60.35 0.81 -0.32 16 20 N -0.39 -3.82 6.98 33.54 0.23 -3.59 16 21 H 0.45 2.90 8.96 -190.40 -1.71 1.19 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 24 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 25 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.04 1.26 7.43 -51.93 -0.39 0.88 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.09 0.93 7.39 -51.93 -0.38 0.55 16 30 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.19 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 284.10 15.07 4.28 4.28 Total: -1.00 -34.21 284.10 -5.25 -39.46 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.30 Total: -3.16 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.93 Total: 0.43 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 1.63 Total: -44.94 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.21 -5.25 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329700317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.952 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds