Wall clock time and date at job start Sun Mar 29 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 2 16 16 C 1.50696 * 109.46969 * 179.97438 * 15 14 12 17 17 C 1.35342 * 126.91770 * 274.68378 * 16 15 14 18 18 N 1.33773 * 106.50144 * 179.90540 * 17 16 15 19 19 N 1.28632 * 108.88379 * 0.37274 * 18 17 16 20 20 N 1.28723 * 110.17619 * 359.76147 * 19 18 17 21 21 H 0.97000 * 125.86339 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 23 23 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 24 24 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 25 25 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 26 26 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 27 27 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46564 * 299.73030 * 14 12 2 29 29 H 1.08998 * 109.47012 * 59.72084 * 14 12 2 30 30 H 1.09000 * 109.46986 * 300.00089 * 15 14 12 31 31 H 1.09002 * 109.46857 * 60.00224 * 15 14 12 32 32 H 1.08008 * 126.75273 * 0.04430 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0081 16 6 1.6261 -4.9403 -0.0074 17 6 1.1484 -5.6026 1.0718 18 7 0.5504 -6.7053 0.6069 19 7 0.6581 -6.7284 -0.6747 20 7 1.2963 -5.6887 -1.0854 21 1 1.5046 -5.4778 -2.0090 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0284 0.5139 26 1 3.1498 1.1385 0.5139 27 1 4.0293 4.4445 -0.8502 28 1 0.7627 -2.5323 0.8921 29 1 0.7546 -2.5277 -0.8877 30 1 3.0022 -3.5751 -0.9007 31 1 3.0102 -3.5798 0.8793 32 1 1.2314 -5.2994 2.1051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329700317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:33 Heat of formation + Delta-G solvation = 24.145875 kcal Electronic energy + Delta-G solvation = -16361.911780 eV Core-core repulsion = 13551.508700 eV Total energy + Delta-G solvation = -2810.403079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.27413 -40.62194 -36.64627 -35.42481 -34.67902 -34.10555 -31.22723 -29.59564 -27.35088 -26.25667 -24.27729 -23.89352 -22.48857 -19.92322 -19.20519 -18.68297 -17.76953 -17.21965 -16.86984 -16.65754 -16.06831 -15.34752 -15.09351 -14.74430 -14.20874 -13.97096 -13.61282 -13.42945 -13.37349 -13.00758 -12.77686 -12.72463 -12.48641 -12.27719 -12.17294 -11.78716 -11.70187 -11.56861 -10.63942 -10.62907 -10.11399 -9.38935 -8.21447 -6.36525 0.56892 1.37747 1.41266 1.48706 1.55159 1.86644 1.87849 2.34273 2.50209 3.08256 3.45262 3.70781 3.92280 4.04450 4.15590 4.31650 4.41067 4.53460 4.65591 4.75476 4.99040 5.02600 5.05856 5.09852 5.23726 5.25700 5.57165 5.85278 5.98505 6.07123 6.71000 6.82732 7.29730 7.44165 7.51315 8.85263 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.004701 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.875001 B = 5954.264437 C = 6156.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.966 3.034 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.494 3.506 13 O -0.596 6.596 14 C -0.118 4.118 15 C -0.025 4.025 16 C 0.011 3.989 17 C -0.050 4.050 18 N -0.300 5.300 19 N -0.110 5.110 20 N -0.376 5.376 21 H 0.461 0.539 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.021 0.979 26 H 0.000 1.000 27 H 0.267 0.733 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.641 -13.445 0.160 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.284 3.716 13 O -0.478 6.478 14 C -0.158 4.158 15 C -0.065 4.065 16 C -0.124 4.124 17 C -0.208 4.208 18 N -0.166 5.166 19 N -0.089 5.089 20 N -0.099 5.099 21 H 0.310 0.690 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.039 0.961 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.727 -14.633 -0.084 16.548 hybrid contribution 1.132 1.877 -0.980 2.401 sum -6.595 -12.756 -1.065 14.399 Atomic orbital electron populations 1.21933 0.77957 1.03920 1.02638 1.48196 1.08360 1.06527 1.71208 1.18749 0.91176 0.80599 0.95923 1.21690 1.36794 1.06546 0.93137 0.92698 1.25854 0.94975 0.96482 1.01850 1.70046 1.38946 1.14796 1.33104 0.85488 0.78791 0.77368 0.79282 1.18562 1.20550 1.20171 1.21336 0.87818 0.86570 0.75907 1.90657 1.16505 1.88172 1.52478 1.21648 0.98687 0.88821 1.06680 1.19779 0.95626 0.85164 1.05954 1.22281 1.04743 0.98121 0.87240 1.23923 1.02009 0.92936 1.01942 1.75067 1.19419 1.20763 1.01373 1.78232 1.15062 1.08054 1.07588 1.45187 1.37406 1.15319 1.11959 0.69042 0.91066 0.91929 0.88660 0.96106 0.98235 0.92428 0.85895 0.87152 0.89916 0.88004 0.76828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.25 127.77 1.31 3.38 16 2 N -0.61 -23.89 2.86 -851.13 -2.43 -26.33 16 3 C 0.26 13.39 5.16 85.63 0.44 13.83 16 4 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -55.32 13.29 21.44 0.28 -55.04 16 8 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.49 17.94 7.67 87.66 0.67 18.61 16 13 O -0.60 -27.85 15.56 -3.04 -0.05 -27.90 16 14 C -0.12 -2.47 4.24 29.85 0.13 -2.35 16 15 C -0.03 -0.49 5.07 29.85 0.15 -0.33 16 16 C 0.01 0.20 6.56 41.35 0.27 0.47 16 17 C -0.05 -0.97 11.99 83.73 1.00 0.04 16 18 N -0.30 -7.49 12.41 -58.26 -0.72 -8.21 16 19 N -0.11 -2.57 13.38 37.02 0.50 -2.08 16 20 N -0.38 -6.42 6.98 -47.80 -0.33 -6.76 16 21 H 0.46 4.82 8.96 -219.95 -1.97 2.85 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.82 8.07 -2.39 -0.02 1.81 16 24 H 0.09 1.80 6.43 -2.38 -0.02 1.79 16 25 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.00 -0.03 7.43 -2.39 -0.02 -0.05 16 27 H 0.27 14.95 8.31 -92.70 -0.77 14.17 16 28 H 0.12 1.94 8.11 -2.39 -0.02 1.92 16 29 H 0.11 1.86 7.39 -2.39 -0.02 1.85 16 30 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 32 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -76.51 284.10 3.12 -73.39 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -0.83 Total: 2.77 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 4.68 Total: 4.42 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -2.71 Total: -98.41 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.51 3.12 -73.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329700317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.541 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds