Wall clock time and date at job start Sun Mar 29 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09007 * 109.46808 * 55.00111 * 3 2 1 5 5 C 1.50702 * 109.47302 * 174.99910 * 3 2 1 6 6 H 1.07994 * 120.00139 * 120.00264 * 5 3 2 7 7 C 1.37881 * 119.99886 * 300.00650 * 5 3 2 8 8 N 1.31510 * 119.99988 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99751 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47318 * 89.99714 * 9 7 5 11 11 H 1.48501 * 109.46833 * 209.99500 * 9 7 5 12 12 H 1.48500 * 109.47103 * 329.99667 * 9 7 5 13 13 O 1.45199 * 109.47319 * 294.99962 * 3 2 1 14 14 C 1.34234 * 116.99926 * 90.00111 * 13 3 2 15 15 O 1.20832 * 119.99895 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00216 * 180.02562 * 14 13 3 17 17 C 1.53002 * 110.34064 * 302.28584 * 16 14 13 18 18 C 1.51098 * 110.38924 * 64.69156 * 16 14 13 19 19 C 1.30798 * 111.15292 * 102.40612 * 18 16 14 20 20 C 1.51106 * 110.94366 * 359.95455 * 19 18 16 21 21 C 1.54630 * 110.38901 * 179.97438 * 16 14 13 22 22 H 1.09008 * 109.46984 * 60.00072 * 1 2 3 23 23 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47397 * 300.00065 * 1 2 3 25 25 H 1.09010 * 109.47299 * 240.00224 * 2 1 3 26 26 H 1.08998 * 109.47304 * 120.00406 * 2 1 3 27 27 H 0.97003 * 120.00180 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47105 * 297.70668 * 17 16 14 29 29 H 1.08995 * 109.47643 * 57.71219 * 17 16 14 30 30 H 1.09001 * 109.47043 * 177.71107 * 17 16 14 31 31 H 1.08007 * 124.44960 * 282.39185 * 18 16 14 32 32 H 1.08002 * 124.60984 * 179.97438 * 19 18 16 33 33 H 1.09002 * 110.38747 * 257.61980 * 20 19 18 34 34 H 1.09000 * 110.38500 * 135.35448 * 20 19 18 35 35 H 1.09004 * 111.04043 * 147.79030 * 21 16 14 36 36 H 1.09000 * 111.03927 * 23.84607 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 3.4061 0.3372 2.1732 9 14 6.0049 0.8799 1.3811 10 1 6.4428 2.1127 2.0837 11 1 6.4390 -0.3112 2.1545 12 1 6.6130 0.8394 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2654 16 6 0.0069 3.4217 -2.5086 17 6 1.0281 4.4753 -2.9426 18 6 -0.2202 2.4182 -3.6152 19 6 -1.4946 2.1697 -3.7727 20 6 -2.3255 2.9675 -2.7947 21 6 -1.3764 4.0737 -2.2799 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8292 -0.0613 2.9498 28 1 1.1180 5.2354 -2.1665 29 1 1.9963 3.9999 -3.0996 30 1 0.6973 4.9411 -3.8708 31 1 0.5667 1.9652 -4.2001 32 1 -1.9005 1.4858 -4.5035 33 1 -2.6532 2.3344 -1.9701 34 1 -3.1853 3.4089 -3.2986 35 1 -1.4819 4.9848 -2.8690 36 1 -1.5453 4.2723 -1.2216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343504594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:07 Heat of formation + Delta-G solvation = -85.182546 kcal Electronic energy + Delta-G solvation = -17809.772983 eV Core-core repulsion = 15065.876660 eV Total energy + Delta-G solvation = -2743.896323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29100 -37.94950 -35.53535 -33.48891 -31.61046 -31.04440 -28.85061 -27.26520 -24.93172 -23.45202 -22.26919 -20.02373 -19.47982 -18.48913 -16.91748 -16.46937 -15.86365 -15.26090 -14.93128 -14.52371 -13.75926 -13.12947 -12.99752 -12.81194 -12.12358 -12.11153 -11.81135 -11.74008 -11.43619 -11.29300 -11.24778 -11.02268 -10.95243 -10.87849 -10.62539 -10.59552 -10.25156 -9.77002 -9.68328 -9.33648 -8.76365 -8.73527 -8.42997 -6.16788 -4.23706 2.25072 3.12607 3.24999 3.30642 3.34684 3.79394 4.35175 4.61313 4.73056 5.12153 5.15437 5.26797 5.47369 5.61203 5.69965 5.81714 5.86536 6.02447 6.04745 6.16570 6.26104 6.31902 6.33080 6.44731 6.51038 6.54716 6.91329 6.93452 7.00685 7.20418 7.31215 7.64238 7.76937 7.99141 8.19259 8.69168 8.94624 9.41589 10.90009 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036479 B = 0.007078 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.382651 B = 3955.112910 C = 4303.824800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.045 0.955 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.351 6.351 14 C 0.469 3.531 15 O -0.516 6.516 16 C -0.037 4.037 17 C -0.134 4.134 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.102 4.102 21 C -0.111 4.111 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.108 0.892 27 H 0.266 0.734 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 4.627 -10.096 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.311 3.689 15 O -0.406 6.406 16 C -0.038 4.038 17 C -0.192 4.192 18 C -0.163 4.163 19 C -0.180 4.180 20 C -0.139 4.139 21 C -0.148 4.148 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.559 4.502 -9.581 13.007 hybrid contribution 0.924 -0.253 0.263 0.993 sum -6.635 4.250 -9.318 12.202 Atomic orbital electron populations 1.21853 0.98411 0.98890 1.00789 1.21999 0.92618 0.99422 1.03224 1.20648 0.94925 0.88767 0.78842 0.93687 1.21053 0.89767 1.38835 1.06182 0.91375 1.24885 0.99179 0.94797 0.95100 1.69894 1.35347 1.37910 1.09469 0.86301 0.83993 0.77685 0.78334 1.20419 1.20952 1.19603 1.86468 1.34159 1.62235 1.43826 1.22936 0.80638 0.76632 0.88690 1.90570 1.55589 1.58686 1.35775 1.20340 0.97205 0.95041 0.91249 1.21755 0.98764 0.97429 1.01206 1.23133 0.97377 0.98567 0.97254 1.23418 0.95462 0.99958 0.99157 1.21376 0.98030 0.96661 0.97820 1.22521 0.91553 0.97448 1.03290 0.94806 0.94946 0.92917 0.94079 0.87439 0.92426 0.92086 0.90863 0.91692 0.85001 0.85485 0.90308 0.91145 0.90368 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.56 37.15 0.32 -2.89 16 2 C -0.13 -3.42 5.49 -26.74 -0.15 -3.56 16 3 C 0.22 5.95 2.25 -27.88 -0.06 5.89 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.69 8.90 -34.44 -0.31 -15.00 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.31 11.29 55.43 0.63 -24.69 16 9 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 O -0.35 -8.46 9.66 -39.27 -0.38 -8.84 16 14 C 0.47 9.96 5.08 36.00 0.18 10.14 16 15 O -0.52 -12.08 12.60 -18.75 -0.24 -12.32 16 16 C -0.04 -0.60 0.84 -155.76 -0.13 -0.73 16 17 C -0.13 -1.87 8.44 37.16 0.31 -1.56 16 18 C -0.15 -2.10 9.40 -35.78 -0.34 -2.44 16 19 C -0.16 -2.08 10.80 -35.77 -0.39 -2.47 16 20 C -0.10 -1.30 6.80 -26.86 -0.18 -1.49 16 21 C -0.11 -1.53 6.02 -25.05 -0.15 -1.68 16 22 H 0.03 0.74 6.06 -51.92 -0.31 0.43 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 25 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 26 H 0.11 2.94 5.95 -51.93 -0.31 2.64 16 27 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.09 1.41 6.95 -51.93 -0.36 1.05 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -30.09 293.26 -7.09 -37.18 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.52 Total: 2.26 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.98 Total: -14.15 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.63 Total: -24.69 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.62 Total: -21.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.09 -7.09 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343504594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.001 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds