Wall clock time and date at job start Sun Mar 29 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09007 * 109.46808 * 55.00111 * 3 2 1 5 5 C 1.50702 * 109.47302 * 174.99910 * 3 2 1 6 6 H 1.07994 * 120.00139 * 120.00264 * 5 3 2 7 7 C 1.37881 * 119.99886 * 300.00650 * 5 3 2 8 8 N 1.31510 * 119.99988 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99751 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47318 * 89.99714 * 9 7 5 11 11 H 1.48501 * 109.46833 * 209.99500 * 9 7 5 12 12 H 1.48500 * 109.47103 * 329.99667 * 9 7 5 13 13 O 1.45199 * 109.47319 * 294.99962 * 3 2 1 14 14 C 1.34234 * 116.99926 * 90.00111 * 13 3 2 15 15 O 1.20832 * 119.99895 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00216 * 180.02562 * 14 13 3 17 17 C 1.53002 * 110.34064 * 302.28584 * 16 14 13 18 18 C 1.51098 * 110.38924 * 64.69156 * 16 14 13 19 19 C 1.30798 * 111.15292 * 102.40612 * 18 16 14 20 20 C 1.51106 * 110.94366 * 359.95455 * 19 18 16 21 21 C 1.54630 * 110.38901 * 179.97438 * 16 14 13 22 22 H 1.09008 * 109.46984 * 60.00072 * 1 2 3 23 23 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47397 * 300.00065 * 1 2 3 25 25 H 1.09010 * 109.47299 * 240.00224 * 2 1 3 26 26 H 1.08998 * 109.47304 * 120.00406 * 2 1 3 27 27 H 0.97003 * 120.00180 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47105 * 297.70668 * 17 16 14 29 29 H 1.08995 * 109.47643 * 57.71219 * 17 16 14 30 30 H 1.09001 * 109.47043 * 177.71107 * 17 16 14 31 31 H 1.08007 * 124.44960 * 282.39185 * 18 16 14 32 32 H 1.08002 * 124.60984 * 179.97438 * 19 18 16 33 33 H 1.09002 * 110.38747 * 257.61980 * 20 19 18 34 34 H 1.09000 * 110.38500 * 135.35448 * 20 19 18 35 35 H 1.09004 * 111.04043 * 147.79030 * 21 16 14 36 36 H 1.09000 * 111.03927 * 23.84607 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 3.4061 0.3372 2.1732 9 14 6.0049 0.8799 1.3811 10 1 6.4428 2.1127 2.0837 11 1 6.4390 -0.3112 2.1545 12 1 6.6130 0.8394 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4727 2.7255 -1.2559 15 8 -0.2193 2.7370 -0.2654 16 6 0.0069 3.4217 -2.5086 17 6 1.0281 4.4753 -2.9426 18 6 -0.2202 2.4182 -3.6152 19 6 -1.4946 2.1697 -3.7727 20 6 -2.3255 2.9675 -2.7947 21 6 -1.3764 4.0737 -2.2799 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8292 -0.0613 2.9498 28 1 1.1180 5.2354 -2.1665 29 1 1.9963 3.9999 -3.0996 30 1 0.6973 4.9411 -3.8708 31 1 0.5667 1.9652 -4.2001 32 1 -1.9005 1.4858 -4.5035 33 1 -2.6532 2.3344 -1.9701 34 1 -3.1853 3.4089 -3.2986 35 1 -1.4819 4.9848 -2.8690 36 1 -1.5453 4.2723 -1.2216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343504594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:07 Heat of formation + Delta-G solvation = -101.229511 kcal Electronic energy + Delta-G solvation = -17810.468832 eV Core-core repulsion = 15065.876660 eV Total energy + Delta-G solvation = -2744.592172 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85188 -39.39431 -37.36674 -35.51638 -33.45077 -32.41591 -29.93936 -29.30250 -26.21692 -25.31848 -23.87015 -21.87936 -20.78793 -19.97162 -18.73799 -18.17564 -17.53921 -16.92831 -16.57924 -16.11300 -15.19173 -14.87666 -14.60278 -14.23627 -13.82743 -13.58497 -13.36766 -13.14850 -13.05850 -12.88155 -12.80322 -12.75523 -12.56768 -12.23286 -12.11868 -12.09670 -11.76912 -11.74574 -11.45802 -11.21452 -10.81632 -10.54364 -9.90628 -8.28649 -6.45758 1.10577 1.39872 1.42035 1.49764 1.54704 2.14365 2.44238 3.00731 3.47823 3.63062 3.93421 4.07627 4.29786 4.33681 4.36966 4.44721 4.54079 4.57148 4.76890 4.79955 4.83502 4.90876 4.97917 5.05519 5.11087 5.19760 5.20706 5.33192 5.39300 5.49868 5.51747 5.65549 5.90197 5.97692 6.14919 6.59846 7.03597 7.27053 8.78255 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036479 B = 0.007078 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.382651 B = 3955.112910 C = 4303.824800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.263 1.263 13 O -0.360 6.360 14 C 0.459 3.541 15 O -0.545 6.545 16 C -0.037 4.037 17 C -0.132 4.132 18 C -0.172 4.172 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.110 4.110 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.271 0.729 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 4.808 -11.989 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.197 1.197 11 H -0.199 1.199 12 H -0.187 1.187 13 O -0.276 6.276 14 C 0.304 3.696 15 O -0.436 6.436 16 C -0.038 4.038 17 C -0.189 4.189 18 C -0.190 4.190 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.147 4.147 22 H 0.055 0.945 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.859 4.692 -11.487 14.688 hybrid contribution 0.913 -0.275 0.866 1.288 sum -6.946 4.417 -10.621 13.438 Atomic orbital electron populations 1.21689 0.96343 1.00467 0.99978 1.21843 0.94407 0.98182 1.02176 1.20328 0.94496 0.89238 0.78779 0.97988 1.21341 0.90567 1.39965 1.06914 0.91688 1.25817 1.04304 0.93826 0.94324 1.70016 1.37484 1.37956 1.09862 0.85217 0.77635 0.78069 0.78720 1.19743 1.19928 1.18698 1.86467 1.36068 1.62870 1.42183 1.24213 0.79216 0.75797 0.90414 1.90550 1.55974 1.59586 1.37468 1.20575 0.98658 0.95661 0.88949 1.21786 0.97669 0.96711 1.02710 1.23160 0.98451 0.99726 0.97695 1.23752 0.94726 0.98760 0.98498 1.21447 0.98981 0.96219 0.97534 1.22586 0.90362 0.99125 1.02607 0.94506 0.92037 0.94752 0.93726 0.89621 0.92022 0.92565 0.92307 0.88030 0.84491 0.82576 0.92090 0.87727 0.87019 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16 2 C -0.13 -6.67 5.49 30.59 0.17 -6.50 16 3 C 0.22 12.64 2.25 29.85 0.07 12.70 16 4 H 0.00 0.15 7.16 -2.38 -0.02 0.13 16 5 C -0.55 -31.95 8.90 25.60 0.23 -31.73 16 6 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.92 -53.29 11.29 21.45 0.24 -53.05 16 9 Si 0.98 43.44 29.54 68.60 2.03 45.47 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 13 O -0.36 -17.91 9.66 -51.45 -0.50 -18.41 16 14 C 0.46 19.97 5.08 71.23 0.36 20.33 16 15 O -0.54 -26.51 12.60 21.95 0.28 -26.23 16 16 C -0.04 -1.16 0.84 -52.99 -0.04 -1.21 16 17 C -0.13 -3.51 8.44 71.98 0.61 -2.90 16 18 C -0.17 -4.64 9.40 25.98 0.24 -4.40 16 19 C -0.14 -3.14 10.80 25.98 0.28 -2.86 16 20 C -0.11 -2.40 6.80 30.51 0.21 -2.20 16 21 C -0.11 -2.84 6.02 31.69 0.19 -2.65 16 22 H 0.04 1.62 6.06 -2.38 -0.01 1.61 16 23 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 24 H 0.03 1.66 7.80 -2.39 -0.02 1.64 16 25 H 0.04 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.09 4.84 5.95 -2.39 -0.01 4.83 16 27 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.72 8.07 -2.39 -0.02 1.70 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 2.14 7.92 -2.39 -0.02 2.12 16 36 H 0.07 2.09 6.95 -2.39 -0.02 2.07 16 Total: -1.00 -67.27 293.26 6.47 -60.80 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 1.05 Total: 16.63 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.38 Total: -25.21 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.24 Total: -53.05 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.22 Total: -44.64 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.27 6.47 -60.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343504594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.429 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds