Wall clock time and date at job start Sun Mar 29 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47142 * 2 1 4 4 C 1.50699 * 119.99961 * 274.99996 * 3 2 1 5 5 C 1.33086 * 120.00459 * 95.00003 * 3 2 1 6 6 C 1.46948 * 120.00349 * 185.66097 * 5 3 2 7 7 O 1.21530 * 119.99938 * 5.64017 * 6 5 3 8 8 O 1.34800 * 120.00003 * 185.63173 * 6 5 3 9 9 C 1.45193 * 116.99976 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47070 * 329.99985 * 9 8 6 11 11 C 1.50708 * 109.47079 * 210.00102 * 9 8 6 12 12 H 1.07996 * 119.99608 * 359.97438 * 11 9 8 13 13 C 1.37873 * 119.99773 * 179.97438 * 11 9 8 14 14 N 1.31512 * 120.00362 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99637 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46859 * 60.00331 * 15 13 11 17 17 H 1.48495 * 109.46982 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47484 * 300.00048 * 15 13 11 19 19 C 1.53002 * 109.47227 * 90.00175 * 9 8 6 20 20 C 1.52998 * 117.49805 * 8.74720 * 19 9 8 21 21 C 1.52998 * 117.49872 * 300.08615 * 19 9 8 22 22 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47070 * 300.00026 * 1 2 3 24 24 H 1.08996 * 109.47598 * 60.00014 * 1 2 3 25 25 H 1.08996 * 109.46780 * 239.99803 * 2 1 3 26 26 H 1.09003 * 109.46759 * 120.00063 * 2 1 3 27 27 H 1.08999 * 109.47557 * 354.80455 * 4 3 2 28 28 H 1.09002 * 109.47198 * 114.80619 * 4 3 2 29 29 H 1.08999 * 109.47357 * 234.80198 * 4 3 2 30 30 H 1.08007 * 119.99329 * 5.66691 * 5 3 2 31 31 H 0.96997 * 119.99925 * 180.02562 * 14 13 11 32 32 H 1.09005 * 115.55050 * 154.41688 * 19 9 8 33 33 H 1.09002 * 117.49742 * 0.02562 * 20 19 9 34 34 H 1.09001 * 117.50020 * 145.02442 * 20 19 9 35 35 H 1.08993 * 117.49758 * 214.97967 * 21 19 9 36 36 H 1.08999 * 117.49777 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1762 2.1690 -1.3001 5 6 2.3488 2.0147 1.1481 6 6 2.7192 3.4367 1.1621 7 8 2.6380 4.0958 0.1443 8 8 3.1490 4.0100 2.3039 9 6 3.4970 5.4183 2.2440 10 1 3.8583 5.6611 1.2447 11 6 4.5765 5.7125 3.2536 12 1 4.9621 4.9202 3.8781 13 6 5.0719 6.9929 3.3799 14 7 4.6020 7.9578 2.6198 15 14 6.4095 7.3576 4.6319 16 1 7.6092 6.5373 4.3275 17 1 6.7664 8.7977 4.5697 18 1 5.9166 7.0277 5.9933 19 6 2.2607 6.2631 2.5585 20 6 1.0143 5.5314 3.0606 21 6 1.0457 6.1058 1.6420 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9608 1.4979 -2.1315 28 1 1.4769 3.0050 -1.3175 29 1 3.1950 2.5457 -1.3918 30 1 2.3336 1.4515 2.0696 31 1 4.9507 8.8585 2.7084 32 1 2.4598 7.2549 2.9645 33 1 1.0752 4.4483 3.1672 34 1 0.3932 6.0420 3.7965 35 1 0.4454 6.9939 1.4453 36 1 1.1274 5.4008 0.8147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344934882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:34 Heat of formation + Delta-G solvation = -60.134031 kcal Electronic energy + Delta-G solvation = -17285.450126 eV Core-core repulsion = 14542.639988 eV Total energy + Delta-G solvation = -2742.810138 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70367 -37.13597 -35.67720 -34.54278 -32.77341 -30.93469 -28.36309 -27.26572 -24.33383 -23.22664 -21.47886 -21.16717 -19.05493 -18.19851 -16.83007 -16.59720 -15.69904 -15.21012 -14.71032 -14.47436 -14.09805 -13.76031 -13.42397 -12.76441 -12.53153 -12.30694 -12.15204 -11.72716 -11.48857 -11.37097 -11.22340 -11.04014 -10.97780 -10.91919 -10.52859 -10.26029 -10.03964 -9.43620 -9.41854 -9.03316 -8.96574 -8.48543 -8.40097 -6.15944 -4.22811 1.53731 3.28288 3.31783 3.34138 3.64148 3.79035 4.36092 4.76684 4.89690 5.00099 5.16250 5.16746 5.22441 5.49233 5.65633 5.74435 5.79558 5.87367 5.90030 5.99069 6.07741 6.12855 6.18262 6.30631 6.50052 6.59712 6.64654 6.75382 7.00435 7.06160 7.24834 7.61126 7.64256 7.89316 8.16522 8.68780 8.93681 9.41628 10.91293 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035091 B = 0.006130 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.735542 B = 4566.655917 C = 4836.635697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.042 4.042 4 C -0.117 4.117 5 C -0.197 4.197 6 C 0.481 3.519 7 O -0.516 6.516 8 O -0.350 6.350 9 C 0.248 3.752 10 H 0.052 0.948 11 C -0.518 4.518 12 H 0.069 0.931 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.115 4.115 20 C -0.194 4.194 21 C -0.210 4.210 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.266 0.734 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -11.963 -3.875 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.043 4.043 4 C -0.173 4.173 5 C -0.216 4.216 6 C 0.328 3.672 7 O -0.409 6.409 8 O -0.266 6.266 9 C 0.196 3.804 10 H 0.069 0.931 11 C -0.556 4.556 12 H 0.087 0.913 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.134 4.134 20 C -0.232 4.232 21 C -0.247 4.247 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.464 -11.515 -4.169 13.848 hybrid contribution 0.607 0.473 0.696 1.038 sum -5.857 -11.042 -3.473 12.973 Atomic orbital electron populations 1.21717 0.94190 1.01825 1.02652 1.20716 0.96545 0.92523 1.03182 1.22543 0.91053 0.95401 0.95285 1.21046 1.04122 0.99490 0.92651 1.21920 1.07692 0.92729 0.99225 1.21326 0.74719 0.88691 0.82495 1.90744 1.50589 1.65358 1.34239 1.86590 1.74230 1.31271 1.34555 1.20093 0.91128 0.70170 0.99051 0.93068 1.20930 1.18861 0.95122 1.20676 0.91290 1.24893 0.97069 0.95548 0.96313 1.69972 1.42272 1.01530 1.38584 0.86373 0.81509 0.77206 0.81292 1.19990 1.21062 1.19928 1.23016 0.88095 1.02088 1.00213 1.22795 1.03933 0.99807 0.96618 1.23140 1.05028 1.02723 0.93781 0.92205 0.92206 0.92328 0.90605 0.90694 0.93091 0.89511 0.90260 0.85100 0.92395 0.85381 0.89757 0.90535 0.90658 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.09 -0.90 6.04 -27.89 -0.17 -1.07 16 3 C -0.04 -0.57 5.37 -101.14 -0.54 -1.11 16 4 C -0.12 -1.63 8.34 36.01 0.30 -1.33 16 5 C -0.20 -3.18 9.75 -37.85 -0.37 -3.55 16 6 C 0.48 10.20 6.78 34.26 0.23 10.43 16 7 O -0.52 -11.71 10.30 -19.29 -0.20 -11.91 16 8 O -0.35 -8.47 8.39 -40.77 -0.34 -8.81 16 9 C 0.25 6.69 2.41 -27.88 -0.07 6.62 16 10 H 0.05 1.53 7.16 -51.93 -0.37 1.16 16 11 C -0.52 -14.62 8.90 -34.44 -0.31 -14.92 16 12 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 13 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 14 N -0.89 -25.21 11.59 55.43 0.64 -24.57 16 15 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.12 -2.92 5.27 -90.62 -0.48 -3.39 16 20 C -0.19 -4.22 9.80 -26.69 -0.26 -4.48 16 21 C -0.21 -4.68 9.85 -26.69 -0.26 -4.95 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.64 8.11 -51.93 -0.42 0.21 16 26 H 0.07 0.67 7.99 -51.93 -0.42 0.25 16 27 H 0.05 0.56 7.98 -51.93 -0.41 0.14 16 28 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 29 H 0.08 1.25 7.41 -51.93 -0.38 0.86 16 30 H 0.13 1.86 8.00 -52.48 -0.42 1.44 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.13 3.51 6.46 -51.93 -0.34 3.17 16 33 H 0.08 1.80 6.91 -51.93 -0.36 1.44 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 2.15 5.36 -51.93 -0.28 1.87 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -29.73 298.04 -7.50 -37.23 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.43 Total: 4.47 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.65 Total: -17.02 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.64 Total: -24.57 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.54 Total: -20.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.73 -7.50 -37.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.901 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds