Wall clock time and date at job start Sun Mar 29 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47142 * 2 1 4 4 C 1.50699 * 119.99961 * 274.99996 * 3 2 1 5 5 C 1.33086 * 120.00459 * 95.00003 * 3 2 1 6 6 C 1.46948 * 120.00349 * 185.66097 * 5 3 2 7 7 O 1.21530 * 119.99938 * 5.64017 * 6 5 3 8 8 O 1.34800 * 120.00003 * 185.63173 * 6 5 3 9 9 C 1.45193 * 116.99976 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47070 * 329.99985 * 9 8 6 11 11 C 1.50708 * 109.47079 * 210.00102 * 9 8 6 12 12 H 1.07996 * 119.99608 * 359.97438 * 11 9 8 13 13 C 1.37873 * 119.99773 * 179.97438 * 11 9 8 14 14 N 1.31512 * 120.00362 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99637 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46859 * 60.00331 * 15 13 11 17 17 H 1.48495 * 109.46982 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47484 * 300.00048 * 15 13 11 19 19 C 1.53002 * 109.47227 * 90.00175 * 9 8 6 20 20 C 1.52998 * 117.49805 * 8.74720 * 19 9 8 21 21 C 1.52998 * 117.49872 * 300.08615 * 19 9 8 22 22 H 1.09000 * 109.47289 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47070 * 300.00026 * 1 2 3 24 24 H 1.08996 * 109.47598 * 60.00014 * 1 2 3 25 25 H 1.08996 * 109.46780 * 239.99803 * 2 1 3 26 26 H 1.09003 * 109.46759 * 120.00063 * 2 1 3 27 27 H 1.08999 * 109.47557 * 354.80455 * 4 3 2 28 28 H 1.09002 * 109.47198 * 114.80619 * 4 3 2 29 29 H 1.08999 * 109.47357 * 234.80198 * 4 3 2 30 30 H 1.08007 * 119.99329 * 5.66691 * 5 3 2 31 31 H 0.96997 * 119.99925 * 180.02562 * 14 13 11 32 32 H 1.09005 * 115.55050 * 154.41688 * 19 9 8 33 33 H 1.09002 * 117.49742 * 0.02562 * 20 19 9 34 34 H 1.09001 * 117.50020 * 145.02442 * 20 19 9 35 35 H 1.08993 * 117.49758 * 214.97967 * 21 19 9 36 36 H 1.08999 * 117.49777 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1762 2.1690 -1.3001 5 6 2.3488 2.0147 1.1481 6 6 2.7192 3.4367 1.1621 7 8 2.6380 4.0958 0.1443 8 8 3.1490 4.0100 2.3039 9 6 3.4970 5.4183 2.2440 10 1 3.8583 5.6611 1.2447 11 6 4.5765 5.7125 3.2536 12 1 4.9621 4.9202 3.8781 13 6 5.0719 6.9929 3.3799 14 7 4.6020 7.9578 2.6198 15 14 6.4095 7.3576 4.6319 16 1 7.6092 6.5373 4.3275 17 1 6.7664 8.7977 4.5697 18 1 5.9166 7.0277 5.9933 19 6 2.2607 6.2631 2.5585 20 6 1.0143 5.5314 3.0606 21 6 1.0457 6.1058 1.6420 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9608 1.4979 -2.1315 28 1 1.4769 3.0050 -1.3175 29 1 3.1950 2.5457 -1.3918 30 1 2.3336 1.4515 2.0696 31 1 4.9507 8.8585 2.7084 32 1 2.4598 7.2549 2.9645 33 1 1.0752 4.4483 3.1672 34 1 0.3932 6.0420 3.7965 35 1 0.4454 6.9939 1.4453 36 1 1.1274 5.4008 0.8147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344934882.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:34 Heat of formation + Delta-G solvation = -75.701015 kcal Electronic energy + Delta-G solvation = -17286.125162 eV Core-core repulsion = 14542.639988 eV Total energy + Delta-G solvation = -2743.485173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42557 -38.72211 -37.08607 -36.30674 -34.87618 -31.91417 -30.15219 -28.78352 -25.70155 -24.87594 -23.23329 -22.69914 -20.93407 -19.59759 -18.61814 -18.42204 -17.47604 -17.02774 -16.24736 -15.74661 -15.57525 -14.98774 -14.91381 -14.28721 -14.06170 -13.58322 -13.54886 -13.14132 -13.07144 -13.01905 -12.78733 -12.65706 -12.35860 -12.25501 -12.19864 -11.97497 -11.75164 -11.33319 -11.14990 -10.87603 -10.47168 -10.42571 -10.18315 -8.26792 -6.43498 0.23037 1.40981 1.44822 1.52739 2.08375 2.13435 2.45873 3.00947 3.14897 3.76575 3.85681 4.06417 4.21635 4.26835 4.29006 4.30268 4.44046 4.63317 4.74138 4.75350 4.79978 4.89416 4.96779 5.01761 5.09989 5.13906 5.25156 5.29052 5.37820 5.49116 5.49548 5.56557 5.61512 5.93255 6.14790 6.62003 7.06171 7.28375 8.80537 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035091 B = 0.006130 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.735542 B = 4566.655917 C = 4836.635697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.007 4.007 4 C -0.121 4.121 5 C -0.228 4.228 6 C 0.471 3.529 7 O -0.542 6.542 8 O -0.362 6.362 9 C 0.256 3.744 10 H 0.005 0.995 11 C -0.547 4.547 12 H 0.065 0.935 13 C 0.020 3.980 14 N -0.913 5.913 15 Si 0.979 3.021 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.146 4.146 20 C -0.167 4.167 21 C -0.198 4.198 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.152 0.848 31 H 0.270 0.730 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -13.905 -3.456 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.008 4.008 4 C -0.177 4.177 5 C -0.246 4.246 6 C 0.320 3.680 7 O -0.436 6.436 8 O -0.278 6.278 9 C 0.202 3.798 10 H 0.022 0.978 11 C -0.585 4.585 12 H 0.083 0.917 13 C -0.181 4.181 14 N -0.551 5.551 15 Si 0.802 3.198 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.165 4.165 20 C -0.204 4.204 21 C -0.235 4.235 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.170 0.830 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.285 -13.479 -3.758 15.776 hybrid contribution 0.816 1.008 0.407 1.359 sum -6.469 -12.471 -3.351 14.443 Atomic orbital electron populations 1.21729 0.93125 1.03298 1.02159 1.20865 0.97148 0.89522 1.05180 1.23018 0.86902 0.97024 0.93836 1.21061 1.02233 0.99843 0.94575 1.21921 1.11305 0.90023 1.01401 1.22293 0.73858 0.90524 0.81321 1.90727 1.51836 1.66404 1.34657 1.86567 1.75069 1.29858 1.36339 1.19670 0.91911 0.72028 0.96176 0.97773 1.21227 1.20193 0.95698 1.21370 0.91723 1.25796 0.99160 0.94999 0.98094 1.70102 1.43293 1.01884 1.39809 0.85296 0.78386 0.77300 0.78804 1.19374 1.20177 1.18882 1.22719 0.88974 1.01329 1.03506 1.22856 1.01079 0.99917 0.96541 1.23122 1.03189 1.03236 0.93958 0.89774 0.93199 0.92436 0.88198 0.89187 0.89317 0.91388 0.92502 0.83037 0.92141 0.87857 0.89418 0.87905 0.88812 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.09 -1.42 6.04 29.85 0.18 -1.24 16 3 C -0.01 -0.18 5.37 -17.61 -0.09 -0.27 16 4 C -0.12 -3.27 8.34 71.24 0.59 -2.68 16 5 C -0.23 -7.23 9.75 23.40 0.23 -7.00 16 6 C 0.47 20.61 6.78 70.10 0.48 21.09 16 7 O -0.54 -25.80 10.30 19.74 0.20 -25.60 16 8 O -0.36 -18.16 8.39 -57.12 -0.48 -18.64 16 9 C 0.26 14.45 2.41 29.85 0.07 14.52 16 10 H 0.00 0.29 7.16 -2.39 -0.02 0.28 16 11 C -0.55 -32.02 8.90 25.60 0.23 -31.79 16 12 H 0.06 3.72 7.81 -2.91 -0.02 3.69 16 13 C 0.02 1.10 5.20 84.65 0.44 1.54 16 14 N -0.91 -53.58 11.59 21.45 0.25 -53.33 16 15 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C -0.15 -7.63 5.27 -10.79 -0.06 -7.68 16 20 C -0.17 -7.15 9.80 30.62 0.30 -6.85 16 21 C -0.20 -8.92 9.85 30.62 0.30 -8.62 16 22 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 26 H 0.09 1.23 7.99 -2.39 -0.02 1.21 16 27 H 0.09 1.70 7.98 -2.39 -0.02 1.68 16 28 H 0.07 2.14 7.09 -2.39 -0.02 2.13 16 29 H 0.06 1.82 7.41 -2.39 -0.02 1.81 16 30 H 0.15 4.10 8.00 -2.91 -0.02 4.07 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.10 5.88 6.46 -2.38 -0.02 5.87 16 33 H 0.09 3.69 6.91 -2.39 -0.02 3.67 16 34 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 35 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 36 H 0.09 4.00 5.36 -2.39 -0.01 3.99 16 Total: -1.00 -67.71 298.04 6.43 -61.27 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 1.05 Total: 20.87 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.38 Total: -30.33 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.25 Total: -53.33 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.28 Total: -44.24 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.71 6.43 -61.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934882.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.428 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds