Wall clock time and date at job start Sun Mar 29 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47481 * 2 1 4 4 C 1.50701 * 119.99696 * 87.71571 * 3 2 1 5 5 C 1.33082 * 120.00206 * 267.72079 * 3 2 1 6 6 C 1.46945 * 120.00065 * 7.85129 * 5 3 2 7 7 O 1.21531 * 120.00125 * 6.13037 * 6 5 3 8 8 O 1.34799 * 119.99926 * 186.13594 * 6 5 3 9 9 C 1.45197 * 117.00051 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47221 * 29.99523 * 9 8 6 11 11 C 1.50699 * 109.47450 * 149.99321 * 9 8 6 12 12 H 1.08001 * 119.99752 * 114.76398 * 11 9 8 13 13 C 1.37879 * 119.99962 * 294.76880 * 11 9 8 14 14 N 1.31519 * 119.99436 * 184.81914 * 13 11 9 15 15 Si 1.86791 * 120.00212 * 4.81833 * 13 11 9 16 16 H 1.48500 * 109.47323 * 84.85853 * 15 13 11 17 17 H 1.48502 * 109.47151 * 204.85881 * 15 13 11 18 18 H 1.48507 * 109.47093 * 324.85663 * 15 13 11 19 19 C 1.53000 * 109.47286 * 269.99808 * 9 8 6 20 20 C 1.52997 * 117.50444 * 134.02904 * 19 9 8 21 21 C 1.52997 * 117.49916 * 65.36635 * 19 9 8 22 22 H 1.08998 * 109.47716 * 59.99674 * 1 2 3 23 23 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46782 * 299.99427 * 1 2 3 25 25 H 1.09010 * 109.46753 * 240.00450 * 2 1 3 26 26 H 1.08998 * 109.47716 * 120.00326 * 2 1 3 27 27 H 1.09006 * 109.46670 * 270.00347 * 4 3 2 28 28 H 1.09002 * 109.47151 * 30.00002 * 4 3 2 29 29 H 1.09001 * 109.47304 * 150.00817 * 4 3 2 30 30 H 1.08005 * 119.99806 * 187.85119 * 5 3 2 31 31 H 0.97010 * 119.99385 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54606 * 279.69579 * 19 9 8 33 33 H 1.09003 * 117.49281 * 359.97438 * 20 19 9 34 34 H 1.08993 * 117.49921 * 145.01631 * 20 19 9 35 35 H 1.09005 * 117.49566 * 214.98442 * 21 19 9 36 36 H 1.08997 * 117.49964 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2345 2.1485 1.3041 5 6 2.2974 2.0329 -1.1516 6 6 1.9397 1.3911 -2.4242 7 8 1.3032 0.3558 -2.4248 8 8 2.3175 1.9507 -3.5908 9 6 1.9298 1.2615 -4.8086 10 1 0.9940 0.7280 -4.6419 11 6 1.7449 2.2657 -5.9170 12 1 2.4025 2.2516 -6.7736 13 6 0.7362 3.2023 -5.8375 14 7 0.5143 4.0168 -6.8460 15 14 -0.3152 3.3143 -4.2977 16 1 0.3676 4.1688 -3.2932 17 1 -1.6324 3.9087 -4.6397 18 1 -0.5167 1.9545 -3.7358 19 6 3.0222 0.2646 -5.2005 20 6 2.5817 -1.1438 -5.6042 21 6 3.2738 -0.9143 -4.2583 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3150 2.6662 1.5775 28 1 2.4936 1.4320 2.0836 29 1 3.0409 2.8736 1.1944 30 1 2.7755 3.0014 -1.1508 31 1 -0.1956 4.6756 -6.7902 32 1 3.8835 0.6897 -5.7159 33 1 1.5135 -1.3603 -5.5903 34 1 3.1534 -1.6454 -6.3850 35 1 4.3006 -1.2651 -4.1542 36 1 2.6613 -0.9795 -3.3591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344934886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:41 Heat of formation + Delta-G solvation = -52.152098 kcal Electronic energy + Delta-G solvation = -17702.697013 eV Core-core repulsion = 14960.232998 eV Total energy + Delta-G solvation = -2742.464015 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.76640 -37.24597 -35.74993 -34.68666 -32.69271 -30.81745 -28.86592 -27.72546 -23.79516 -23.10453 -21.73960 -21.39336 -19.36022 -18.22688 -17.05061 -16.97756 -15.70858 -15.43824 -14.54258 -14.45731 -13.98092 -13.66134 -13.28244 -12.96382 -12.74827 -12.56453 -12.40431 -11.90940 -11.75276 -11.54451 -11.21631 -10.94954 -10.89207 -10.82568 -10.57757 -10.14068 -9.73826 -9.49316 -9.37778 -9.21383 -8.98901 -8.90196 -8.75317 -6.30191 -4.37170 1.53095 3.28499 3.29811 3.39704 3.62148 3.72979 4.31976 4.57643 4.83341 4.98714 5.21298 5.39529 5.44783 5.47210 5.54261 5.66899 5.68670 5.70440 5.77542 5.82776 5.93307 6.08794 6.19141 6.25938 6.39550 6.48737 6.52220 6.58836 6.66063 6.76979 6.79983 7.06495 7.42702 7.73373 8.28817 8.72271 8.82708 9.30935 10.79076 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.010242 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.038708 B = 2733.246143 C = 3517.049913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.044 4.044 4 C -0.122 4.122 5 C -0.200 4.200 6 C 0.475 3.525 7 O -0.519 6.519 8 O -0.351 6.351 9 C 0.207 3.793 10 H 0.051 0.949 11 C -0.508 4.508 12 H 0.088 0.912 13 C 0.087 3.913 14 N -0.876 5.876 15 Si 0.876 3.124 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.259 1.259 19 C -0.138 4.138 20 C -0.170 4.170 21 C -0.200 4.200 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.270 0.730 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -5.735 13.505 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C -0.045 4.045 4 C -0.178 4.178 5 C -0.220 4.220 6 C 0.323 3.677 7 O -0.413 6.413 8 O -0.268 6.268 9 C 0.156 3.844 10 H 0.069 0.931 11 C -0.544 4.544 12 H 0.106 0.894 13 C -0.120 4.120 14 N -0.512 5.512 15 Si 0.703 3.297 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.183 1.183 19 C -0.157 4.157 20 C -0.207 4.207 21 C -0.237 4.237 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.122 0.878 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.406 -5.878 13.354 14.787 hybrid contribution -0.489 0.291 0.619 0.840 sum 1.918 -5.587 13.973 15.170 Atomic orbital electron populations 1.21540 0.94421 1.01564 1.01493 1.21027 0.97068 0.92540 1.03435 1.22560 0.91734 0.95923 0.94303 1.20954 1.02599 1.00106 0.94159 1.22097 1.07137 1.02391 0.90328 1.21488 0.77037 0.82717 0.86460 1.90636 1.38402 1.23819 1.88441 1.87069 1.71106 1.53694 1.14889 1.20745 0.92533 0.91734 0.79436 0.93089 1.21006 1.15591 1.15926 1.01828 0.89377 1.25072 0.96470 0.94401 0.96015 1.69904 1.31217 1.19599 1.30475 0.86857 0.79149 0.79828 0.83819 1.19410 1.21727 1.18335 1.22619 1.01535 0.89135 1.02403 1.22793 1.00715 0.99618 0.97606 1.23164 1.00755 1.04561 0.95219 0.91728 0.92765 0.93870 0.87828 0.92359 0.90425 0.91274 0.91124 0.85068 0.92015 0.88143 0.89072 0.89543 0.90154 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.45 37.15 0.35 -1.56 16 2 C -0.10 -1.48 5.32 -27.89 -0.15 -1.63 16 3 C -0.04 -0.63 5.36 -101.14 -0.54 -1.18 16 4 C -0.12 -1.25 10.05 36.01 0.36 -0.88 16 5 C -0.20 -3.47 9.75 -37.85 -0.37 -3.84 16 6 C 0.48 10.18 6.12 34.26 0.21 10.39 16 7 O -0.52 -11.28 8.63 -19.29 -0.17 -11.45 16 8 O -0.35 -8.52 8.18 -40.76 -0.33 -8.85 16 9 C 0.21 5.18 1.54 -27.88 -0.04 5.13 16 10 H 0.05 1.35 5.91 -51.93 -0.31 1.05 16 11 C -0.51 -14.44 9.35 -34.44 -0.32 -14.76 16 12 H 0.09 2.64 7.99 -52.49 -0.42 2.22 16 13 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 14 N -0.88 -26.28 13.96 55.43 0.77 -25.51 16 15 Si 0.88 22.52 25.56 -169.99 -4.34 18.18 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 18 H -0.26 -6.70 6.42 56.52 0.36 -6.34 16 19 C -0.14 -2.99 5.29 -90.62 -0.48 -3.47 16 20 C -0.17 -3.18 10.18 -26.70 -0.27 -3.45 16 21 C -0.20 -3.74 9.83 -26.70 -0.26 -4.00 16 22 H 0.06 1.13 6.88 -51.93 -0.36 0.77 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.10 1.73 5.60 -51.92 -0.29 1.44 16 26 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 29 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 30 H 0.13 2.07 8.04 -52.48 -0.42 1.65 16 31 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.10 2.15 8.14 -51.93 -0.42 1.72 16 33 H 0.09 1.74 8.08 -51.93 -0.42 1.32 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.10 2.05 5.57 -51.93 -0.29 1.76 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -30.51 294.09 -6.72 -37.24 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.47 Total: 2.77 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.61 Total: -16.81 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.50 Total: -20.30 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.34 Total: 18.18 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.51 -6.72 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.916 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds