Wall clock time and date at job start Sun Mar 29 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47481 * 2 1 4 4 C 1.50701 * 119.99696 * 87.71571 * 3 2 1 5 5 C 1.33082 * 120.00206 * 267.72079 * 3 2 1 6 6 C 1.46945 * 120.00065 * 7.85129 * 5 3 2 7 7 O 1.21531 * 120.00125 * 6.13037 * 6 5 3 8 8 O 1.34799 * 119.99926 * 186.13594 * 6 5 3 9 9 C 1.45197 * 117.00051 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47221 * 29.99523 * 9 8 6 11 11 C 1.50699 * 109.47450 * 149.99321 * 9 8 6 12 12 H 1.08001 * 119.99752 * 114.76398 * 11 9 8 13 13 C 1.37879 * 119.99962 * 294.76880 * 11 9 8 14 14 N 1.31519 * 119.99436 * 184.81914 * 13 11 9 15 15 Si 1.86791 * 120.00212 * 4.81833 * 13 11 9 16 16 H 1.48500 * 109.47323 * 84.85853 * 15 13 11 17 17 H 1.48502 * 109.47151 * 204.85881 * 15 13 11 18 18 H 1.48507 * 109.47093 * 324.85663 * 15 13 11 19 19 C 1.53000 * 109.47286 * 269.99808 * 9 8 6 20 20 C 1.52997 * 117.50444 * 134.02904 * 19 9 8 21 21 C 1.52997 * 117.49916 * 65.36635 * 19 9 8 22 22 H 1.08998 * 109.47716 * 59.99674 * 1 2 3 23 23 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46782 * 299.99427 * 1 2 3 25 25 H 1.09010 * 109.46753 * 240.00450 * 2 1 3 26 26 H 1.08998 * 109.47716 * 120.00326 * 2 1 3 27 27 H 1.09006 * 109.46670 * 270.00347 * 4 3 2 28 28 H 1.09002 * 109.47151 * 30.00002 * 4 3 2 29 29 H 1.09001 * 109.47304 * 150.00817 * 4 3 2 30 30 H 1.08005 * 119.99806 * 187.85119 * 5 3 2 31 31 H 0.97010 * 119.99385 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54606 * 279.69579 * 19 9 8 33 33 H 1.09003 * 117.49281 * 359.97438 * 20 19 9 34 34 H 1.08993 * 117.49921 * 145.01631 * 20 19 9 35 35 H 1.09005 * 117.49566 * 214.98442 * 21 19 9 36 36 H 1.08997 * 117.49964 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2345 2.1485 1.3041 5 6 2.2974 2.0329 -1.1516 6 6 1.9397 1.3911 -2.4242 7 8 1.3032 0.3558 -2.4248 8 8 2.3175 1.9507 -3.5908 9 6 1.9298 1.2615 -4.8086 10 1 0.9940 0.7280 -4.6419 11 6 1.7449 2.2657 -5.9170 12 1 2.4025 2.2516 -6.7736 13 6 0.7362 3.2023 -5.8375 14 7 0.5143 4.0168 -6.8460 15 14 -0.3152 3.3143 -4.2977 16 1 0.3676 4.1688 -3.2932 17 1 -1.6324 3.9087 -4.6397 18 1 -0.5167 1.9545 -3.7358 19 6 3.0222 0.2646 -5.2005 20 6 2.5817 -1.1438 -5.6042 21 6 3.2738 -0.9143 -4.2583 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.3150 2.6662 1.5775 28 1 2.4936 1.4320 2.0836 29 1 3.0409 2.8736 1.1944 30 1 2.7755 3.0014 -1.1508 31 1 -0.1956 4.6756 -6.7902 32 1 3.8835 0.6897 -5.7159 33 1 1.5135 -1.3603 -5.5903 34 1 3.1534 -1.6454 -6.3850 35 1 4.3006 -1.2651 -4.1542 36 1 2.6613 -0.9795 -3.3591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344934886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:41 Heat of formation + Delta-G solvation = -69.539265 kcal Electronic energy + Delta-G solvation = -17703.450977 eV Core-core repulsion = 14960.232998 eV Total energy + Delta-G solvation = -2743.217980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42713 -38.79318 -37.21856 -36.27063 -34.87253 -31.99035 -30.66038 -29.00669 -25.34317 -24.71296 -23.25034 -22.88169 -21.15750 -19.68370 -19.03566 -18.62850 -17.51796 -16.93338 -16.32111 -15.75835 -15.62876 -15.18245 -14.64407 -14.55682 -14.14516 -13.87267 -13.63376 -13.36577 -13.23323 -13.13502 -12.86471 -12.77598 -12.39353 -12.17555 -12.01201 -11.86030 -11.73910 -11.26580 -11.06830 -11.03943 -10.76004 -10.66507 -10.15031 -8.53313 -6.63913 0.22429 1.19879 1.22049 1.31376 2.04552 2.06858 2.19362 2.99150 3.04212 3.75467 3.84063 3.92002 4.06544 4.16606 4.25702 4.38114 4.47346 4.51251 4.60762 4.68218 4.73840 4.80364 4.84072 4.96191 4.97808 5.07126 5.20272 5.25663 5.30275 5.33392 5.34877 5.45889 5.65138 5.94894 6.14482 6.46393 7.05183 7.12552 8.60202 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.010242 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.038708 B = 2733.246143 C = 3517.049913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C -0.006 4.006 4 C -0.122 4.122 5 C -0.244 4.244 6 C 0.466 3.534 7 O -0.530 6.530 8 O -0.370 6.370 9 C 0.217 3.783 10 H 0.031 0.969 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.042 3.958 14 N -0.916 5.916 15 Si 0.930 3.070 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.177 4.177 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.275 0.725 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.026 -6.709 16.832 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 C -0.007 4.007 4 C -0.178 4.178 5 C -0.263 4.263 6 C 0.315 3.685 7 O -0.424 6.424 8 O -0.287 6.287 9 C 0.165 3.835 10 H 0.049 0.951 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.161 4.161 14 N -0.554 5.554 15 Si 0.756 3.244 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.189 4.189 20 C -0.195 4.195 21 C -0.214 4.214 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.748 -6.854 16.692 18.252 hybrid contribution -0.565 0.479 -0.301 0.800 sum 2.183 -6.375 16.390 17.722 Atomic orbital electron populations 1.21504 0.94332 1.02088 1.00828 1.21100 0.97060 0.92679 1.03927 1.23083 0.86943 0.95511 0.95155 1.21114 1.03882 1.00789 0.92044 1.22058 1.11478 1.03755 0.89038 1.22196 0.76774 0.82864 0.86659 1.90637 1.38928 1.24361 1.88486 1.86938 1.71769 1.54300 1.15729 1.20303 0.93100 0.91044 0.79046 0.95089 1.21181 1.15216 1.16637 1.02716 0.92281 1.25737 0.97680 0.94252 0.98413 1.69988 1.32455 1.20794 1.32121 0.86013 0.78233 0.79360 0.80834 1.18446 1.20490 1.19256 1.22486 1.01090 0.89929 1.05420 1.22923 1.00868 0.97056 0.98643 1.23162 1.02160 1.01600 0.94449 0.95550 0.91817 0.91214 0.90567 0.88643 0.88808 0.88525 0.89846 0.83979 0.91561 0.88458 0.89861 0.86530 0.87168 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.45 71.98 0.68 -2.73 16 2 C -0.11 -2.83 5.32 29.85 0.16 -2.67 16 3 C -0.01 -0.16 5.36 -17.60 -0.09 -0.25 16 4 C -0.12 -1.89 10.05 71.24 0.72 -1.17 16 5 C -0.24 -8.11 9.75 23.40 0.23 -7.88 16 6 C 0.47 19.98 6.12 70.10 0.43 20.41 16 7 O -0.53 -23.20 8.63 19.74 0.17 -23.03 16 8 O -0.37 -18.32 8.18 -57.11 -0.47 -18.78 16 9 C 0.22 11.21 1.54 29.85 0.05 11.25 16 10 H 0.03 1.71 5.91 -2.39 -0.01 1.70 16 11 C -0.52 -30.97 9.35 25.60 0.24 -30.73 16 12 H 0.06 3.75 7.99 -2.91 -0.02 3.73 16 13 C 0.04 2.51 5.47 84.65 0.46 2.97 16 14 N -0.92 -56.74 13.96 21.45 0.30 -56.44 16 15 Si 0.93 47.69 25.56 68.60 1.75 49.44 16 16 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 18 H -0.27 -13.96 6.42 99.48 0.64 -13.32 16 19 C -0.17 -7.45 5.29 -10.80 -0.06 -7.51 16 20 C -0.16 -5.76 10.18 30.62 0.31 -5.45 16 21 C -0.18 -6.39 9.83 30.62 0.30 -6.09 16 22 H 0.03 0.88 6.88 -2.39 -0.02 0.86 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 2.43 5.60 -2.38 -0.01 2.42 16 26 H 0.10 1.76 8.06 -2.39 -0.02 1.75 16 27 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.10 1.05 8.06 -2.39 -0.02 1.03 16 29 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 30 H 0.14 4.29 8.04 -2.91 -0.02 4.27 16 31 H 0.27 15.80 8.31 -92.70 -0.77 15.02 16 32 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 33 H 0.08 3.16 8.08 -2.39 -0.02 3.14 16 34 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 36 H 0.09 3.58 5.57 -2.39 -0.01 3.56 16 Total: -1.00 -69.31 294.09 6.16 -63.15 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.98 Total: 15.53 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.42 Total: -29.86 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.44 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.30 Total: -41.81 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.75 Total: 49.44 kcal Total: -69.31 6.16 -63.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.393 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds