Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99864 * 0.02562 * 11 10 9 13 13 O 1.34224 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99833 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47459 * 180.02562 * 14 13 11 16 16 C 1.53002 * 119.30111 * 250.95387 * 15 14 13 17 17 C 1.53874 * 121.33542 * 179.11714 * 15 14 13 18 18 H 1.09008 * 121.32822 * 359.43318 * 17 15 14 19 19 C 1.54266 * 106.59889 * 221.94201 * 17 15 14 20 20 C 1.54884 * 104.19554 * 336.38600 * 19 17 15 21 21 C 1.54273 * 117.41123 * 45.29444 * 15 14 13 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.09004 * 109.47762 * 300.00317 * 14 13 11 28 28 H 1.09001 * 109.47346 * 60.00518 * 14 13 11 29 29 H 1.09003 * 117.45888 * 356.29020 * 16 15 14 30 30 H 1.08997 * 117.46045 * 141.09089 * 16 15 14 31 31 H 1.09007 * 110.48081 * 217.71058 * 19 17 15 32 32 H 1.08995 * 110.60150 * 95.12172 * 19 17 15 33 33 H 1.09005 * 110.75852 * 279.63055 * 20 19 17 34 34 H 1.09004 * 110.91678 * 156.33462 * 20 19 17 35 35 H 1.09004 * 110.48371 * 282.26954 * 21 15 14 36 36 H 1.09000 * 110.48516 * 44.77891 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2837 -4.9672 0.0011 13 8 2.1631 -6.1296 0.0008 14 6 1.3724 -7.3473 0.0020 15 6 2.3044 -8.5607 0.0020 16 6 2.4143 -9.4204 -1.2589 17 6 1.7497 -9.9958 0.0234 18 1 0.6771 -10.1885 0.0484 19 6 2.6292 -10.7936 1.0081 20 6 3.9663 -10.0126 1.0417 21 6 3.5018 -8.5366 0.9744 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.7445 -7.3721 0.8926 28 1 0.7426 -7.3726 -0.8873 29 1 1.7682 -9.1655 -2.0990 30 1 3.4010 -9.8003 -1.5238 31 1 2.7889 -11.8077 0.6415 32 1 2.1745 -10.8141 1.9985 33 1 4.5821 -10.2635 0.1779 34 1 4.5067 -10.2056 1.9685 35 1 4.2982 -7.9034 0.5833 36 1 3.1873 -8.1883 1.9582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345181098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -87.204175 kcal Electronic energy + Delta-G solvation = -16499.565520 eV Core-core repulsion = 13755.581533 eV Total energy + Delta-G solvation = -2743.983988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34005 -39.48720 -36.09205 -33.89817 -31.87963 -31.03227 -29.14502 -26.77786 -25.16044 -23.39345 -22.25558 -20.22403 -19.68501 -18.97739 -17.39007 -16.65503 -16.31244 -16.20364 -15.34361 -14.85089 -14.14269 -13.71280 -13.60375 -13.21559 -12.92059 -12.74731 -12.31938 -12.05959 -11.61751 -11.50295 -11.28385 -11.25771 -10.98663 -10.85268 -10.59106 -10.21140 -10.18707 -10.15517 -10.02414 -9.85607 -9.56909 -8.61374 -8.33314 -6.36657 -4.07545 2.75355 2.90190 3.44259 3.46791 3.48588 3.65630 4.22150 4.38653 4.52306 4.55852 4.67898 4.82756 5.10028 5.20656 5.28331 5.31220 5.41287 5.44245 5.50146 5.60650 5.65228 5.69990 5.77153 5.86586 5.98242 6.01992 6.03461 6.10092 6.10955 6.54811 6.86392 7.40460 7.45217 8.10161 8.31075 8.44573 8.85989 9.66082 11.04312 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059812 B = 0.003905 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.023952 B = 7169.072960 C = 7421.556348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.610 4.610 8 H 0.052 0.948 9 C 0.020 3.980 10 C -0.096 4.096 11 C 0.456 3.544 12 O -0.511 6.511 13 O -0.359 6.359 14 C 0.108 3.892 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.157 4.157 18 H 0.112 0.888 19 C -0.095 4.095 20 C -0.131 4.131 21 C -0.083 4.083 22 H 0.272 0.728 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 -20.790 0.689 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.648 4.648 8 H 0.071 0.929 9 C -0.017 4.017 10 C -0.134 4.134 11 C 0.300 3.700 12 O -0.398 6.398 13 O -0.276 6.276 14 C 0.034 3.966 15 C -0.138 4.138 16 C -0.180 4.180 17 C -0.175 4.175 18 H 0.130 0.870 19 C -0.132 4.132 20 C -0.169 4.169 21 C -0.120 4.120 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.759 -19.171 0.708 20.340 hybrid contribution -0.063 -1.783 -0.031 1.784 sum 6.696 -20.954 0.677 22.008 Atomic orbital electron populations 1.70747 1.06928 1.30960 1.45841 1.25884 0.96538 1.02759 0.93651 0.83511 0.74833 0.75172 0.76519 1.20744 1.21380 1.21374 1.21981 0.94334 0.91660 1.56813 0.92944 1.19134 0.93910 0.91098 0.97569 1.21596 1.00318 0.87239 1.04206 1.24753 0.87865 0.85856 0.71539 1.90620 1.16007 1.87839 1.45358 1.86549 1.41857 1.14678 1.84550 1.22184 0.91753 0.80510 1.02127 1.22226 0.99966 0.90769 1.00830 1.23435 1.02242 1.01490 0.90803 1.23702 0.99563 0.94792 0.99433 0.87014 1.21920 0.94819 0.98329 0.98170 1.22549 0.96986 0.95361 1.01992 1.21789 0.95927 0.96262 0.98055 0.91781 0.96512 0.96520 0.88802 0.88818 0.91259 0.91435 0.88064 0.88535 0.91352 0.90827 0.91313 0.91087 0.90730 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.58 13.65 55.43 0.76 -27.82 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.31 29.90 -169.99 -5.08 20.23 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.61 -17.48 9.11 -34.44 -0.31 -17.79 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.53 3.57 -27.88 -0.10 0.44 16 10 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.46 9.23 7.96 36.01 0.29 9.52 16 12 O -0.51 -11.85 15.73 -18.75 -0.29 -12.14 16 13 O -0.36 -6.12 9.85 -39.24 -0.39 -6.51 16 14 C 0.11 1.55 5.76 37.16 0.21 1.77 16 15 C -0.14 -1.57 2.68 -153.39 -0.41 -1.98 16 16 C -0.14 -1.38 9.69 -25.42 -0.25 -1.63 16 17 C -0.16 -1.45 7.04 -88.19 -0.62 -2.07 16 18 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 19 C -0.10 -0.75 6.78 -25.07 -0.17 -0.92 16 20 C -0.13 -1.08 6.43 -24.74 -0.16 -1.24 16 21 C -0.08 -0.88 6.11 -25.07 -0.15 -1.03 16 22 H 0.27 8.64 7.22 -40.82 -0.29 8.34 16 23 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 24 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 25 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.84 7.23 -51.93 -0.38 0.47 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 7.39 -51.93 -0.38 0.15 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -32.50 301.76 -8.12 -40.62 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.73 Total: -2.17 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.93 Total: -16.75 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.76 Total: -27.82 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.68 Total: -18.65 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.50 -8.12 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345181098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.586 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds